Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 829 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 772 / 0 Major facilitator superfamily protein (.1) AT2G40460 570 / 0 Major facilitator superfamily protein (.1) AT2G02040 522 / 2e-180 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 518 / 6e-179 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 496 / 3e-170 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 495 / 4e-170 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 448 / 5e-152 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 423 / 1e-141 Major facilitator superfamily protein (.1) AT3G54450 418 / 4e-140 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170100 [exp] 1053 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258900 [exp] 820 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 796 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 587 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 520 / 1e-179 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 498 / 5e-171 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 493 / 5e-169 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 483 / 2e-165 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 479 / 6e-164 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011786 [exp] 970 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 960 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 769 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 768 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 738 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 736 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 681 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 528 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 519 / 3e-179 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 514 / 3e-177 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.010G068100.1 pacid=42798342 polypeptide=Potri.010G068100.1.p locus=Potri.010G068100 ID=Potri.010G068100.1.v4.1 annot-version=v4.1 ATGGAACACGGGCTTGATGATTACACACAAGATGGGACCGTGGATCTCAAGGGAAAGCCTGTCCTTAGATCAAAGAGAGGTGGATTGAAAGCTTGCTCCT TTGTTGTTGTGTATGAGGTTTTCGAACGAATGGCATACTATGGGATATCAAGCAATCTTGTAGTGTACTTGACAAAAAAGCTCCATCAAGGCACAGTGAA ATCATCCAATAATGTAACAAATTGGGTCGGCACCATTTGGTTGACTCCTATCTTGGGTGCCTATGTTGCTGATGCACATCTTGGCCGTTACTGGACCTTT GTCGTTGCATCTGTCATCTATCTTTCGGGGATGTCTCTACTAACACTATCAGTTTCCCTTCCTGCACTAAGACCACCTATCTGCAAGAATGCCAATGTGG AGAACTGTAAAGAGGCCTCCACATTACAATTAGCAGTGTTCTTCGGAGCCCTCTACACGCTAGCTATTGGAACTGGGGGAACAAAGCCAAACATCTCGAC AATCGGTGCTGACCAATTTGATGATTTCCATCCTAAGGAGAAGGCTTATAAGCTATCCTTCTTCAACTGGTGGATGTTCAGCATCTTCTTTGGAACGCTC TTTGCTAACACTATACTTGTGTACATACAAGACAATGTGGGTTGGGCATTGGGGTATGGGCTTCCAACTCTTGGGCTTGTGATATCGGTTGCTATATTCT TAGCTGGCACACCATTTTATAGGCACAGGCAGCCAACAGGAAGCCCATTTACAAGGATGGCTAAGGTCATAGTGGCAGCCCTGCGCAAATGGAAGGTTTC AGTCCCTAATGACCCTAAAGAACTCCATGAGCTTGACTTGGAAGAATATGCAAAGGCCGGAAAGTTCAGGATTGATTCTACACCAACCTTAAGGTTCCTA AATAAAGCTGCTGTGAAGACAGGTTCAACTGATCCATGGATGCTTTGCTCAGTTACTCAAGTAGAGGAGACTAAACAGATGTTGAGAATGATTCCGATAT TGATCTCCACATTCGTCCCAAGCACAATGATTGCTCAGATAAATACTCTTTTTGTCAAGCAAGGCACCACTCTTGATAGACAAATTGGCAACTTCGAAGT CCCACCAGCAAGTTTAGCTGGATTTGTGACTCTGTCAATGCTTGTTTGTGTTGTGTTATATGACAGGTTCTTTGTTCGTATTGTTCGTAGGTGGACAAAG AATCCCAGAGGAATCACTCTTCTTCAGAGAATGGGAATAGGCCTTGTTTTTCACATCATAATCATGATAACTGCATCATTAATTGAAAGACACAGATTAA GTGTGGCCAGACAACACGGCTTAGTTGAAAAGGGAGGCCAAGTCCCTTTGACGATATTCATTTTGCTTCCTCAATTTGTGCTCATGGGAGCGGCTGATGC ATTTTTAGAGGTGGCCAAACTCGAGTTCTTCTATGACCAGGCACCTGAAAGCATGAAAAGCCTTGGCACTTCTTATTCAACAACTAGTCTTGGCGTTGGA AACTTCATTAGTAGTTTCCTTCTTTCCACAGTTTCTCATATCACCAAGAAGCATGGTCACCGAGGGTGGATTTTGAATAACCTAAACGCTTCTCACCTGG ACTATTATTATGCCTTCTTCGCAATACTAAACTTCCTGAACTTCATTTTCTTCTTGGGTGTGATTAGGTTTTATGTTTATAAGGCAGAAGTTTCTGATTC AATGGAAGTACTGGCTGAAGAATTAAAGGCGATGAGATTGAGGGAACCTAACCAAGTTTCTGAACATTAA
AA sequence Show only first row Show all	>Potri.010G068100.1 pacid=42798342 polypeptide=Potri.010G068100.1.p locus=Potri.010G068100 ID=Potri.010G068100.1.v4.1 annot-version=v4.1 MEHGLDDYTQDGTVDLKGKPVLRSKRGGLKACSFVVVYEVFERMAYYGISSNLVVYLTKKLHQGTVKSSNNVTNWVGTIWLTPILGAYVADAHLGRYWTF VVASVIYLSGMSLLTLSVSLPALRPPICKNANVENCKEASTLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKAYKLSFFNWWMFSIFFGTL FANTILVYIQDNVGWALGYGLPTLGLVISVAIFLAGTPFYRHRQPTGSPFTRMAKVIVAALRKWKVSVPNDPKELHELDLEEYAKAGKFRIDSTPTLRFL NKAAVKTGSTDPWMLCSVTQVEETKQMLRMIPILISTFVPSTMIAQINTLFVKQGTTLDRQIGNFEVPPASLAGFVTLSMLVCVVLYDRFFVRIVRRWTK NPRGITLLQRMGIGLVFHIIIMITASLIERHRLSVARQHGLVEKGGQVPLTIFILLPQFVLMGAADAFLEVAKLEFFYDQAPESMKSLGTSYSTTSLGVG NFISSFLLSTVSHITKKHGHRGWILNNLNASHLDYYYAFFAILNFLNFIFFLGVIRFYVYKAEVSDSMEVLAEELKAMRLREPNQVSEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	0	1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.002G159500 [exp]	4.00	0.8904
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.001G314400 [exp]	4.47	0.9260
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.018G113300 [exp]	4.69	0.9287
AT1G62810			Copper amine oxidase family pr...		Potri.001G118200 [exp]	5.19	0.9002
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.018G054400 [exp]	5.29	0.9220
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G150301 [exp]	7.48	0.9114
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	7.74	0.9199	CAT5.1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G000800 [exp]	8.12	0.9258
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	8.60	0.8734
AT5G47740			Adenine nucleotide alpha hydro...		Potri.006G003900 [exp]	11.13	0.8641

Compare expression of checked genes

Potri.010G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.