Plant FIBer expression Database

Potri.010G068400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33435 236 / 5e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
AT2G33440 154 / 5e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
AT4G36690 97 / 9e-21 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
AT1G60900 97 / 2e-20 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G040900
[exp]
106 / 1e-23 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Potri.011G050400
[exp]
106 / 1e-23 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Potri.005G125500
[exp]
100 / 2e-21 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Potri.007G028500
[exp]
94 / 1e-19 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023746
[exp]
603 / 0 AT2G33435 209 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Lus10011791
[exp]
593 / 0 AT2G33435 215 / 6e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Lus10041725
[exp]
99 / 3e-21 AT4G36690 672 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Lus10024026
[exp]
98 / 1e-20 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Lus10035713
[exp]
97 / 3e-20 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Lus10037299
[exp]
91 / 9e-19 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence
>Potri.010G068400.14 pacid=42796878 polypeptide=Potri.010G068400.14.p locus=Potri.010G068400 ID=Potri.010G068400.14.v4.1 annot-version=v4.1
ATGATGAGCAGATCCAGTCGGCATAAAGACAAGTATGGAAGAAGTAGTGAGATGTCTCAAGATCACCAGTATGAAGGAACTGCTGCACGGACTAGACCGT
TCAGCTTTGATGAGATTATGTCTATAAGGAAAAACAAGAAAGCATCTGAAATTTTGGAAGGAGAATTAAAAGATATATTAGGAGGTGTTATTAATGAGAA
AGCTTCTGATCATAGATCTGAAAGGGGTAATGGCCACAATGAAGAATCTTCAACTGGTCTCCGACAGCACTTGTCAGAGGAACATGGCAAGGCGAGTTAC
AGAAAAAAAGAAGATAATGTTTCCATGAAGGAGGATTATATAGCCAAAGGCAGAGATAGGGATGTTCGAGATTCAGAAACAAAATCAAAGGCCAAAATGA
ACGAAGATATGAGAACTGAAGTTAAAGAAAAGACTAATGAAAAAATTCATGACAGGAGAAAAGGTGATAAGCGGCCAAGCAATATTTCTGAAAGCGAAGC
TGTGAAGAAGCATTCAAGAGAGGTGCAGAAAGATAGACATGTGGACAAAAGTAGAGGAAAATCTGAAAGAGAAAGAAAGGAAAAATACAGGAATGGTATT
GATGATAAAAGTAGAGACAGGAATGCTGCAAAGAAACATGATTTAGGAAAAGGGCATCATTTAGAAACTTCTGAGAGAAAGGAAAGGAAGGAATCTTCAA
AATCTCATCATGAAGAATTAAGGCTGAAAAGGAGACGATCAAGGAGCCGAGAGCACGAGGACAGAAATAGAAGGTCTATTTCACTCTCACCAAGGGCTCA
CAAACGTGGTTCTTATCACAAAAGAGAACATGTGGAATTGTCCTCGCATTCTGTCAAAGAAAGGTCTGGACGACAACAATCTGATGCTGAAAATAACCAA
CTTACAAACAGTAGTTCTAGTAGGCATCAGAGGAGACATGGTGGCTTTGCAAGTGGGCTTGGTGGCTATTCACCAAGGAAGAGAAAAACTGAGGCCGCTA
TTAAGACTCCTTCCCCAGCTAAACGCTCACCAGAGAAGAAAAGTGCTAAATGGGACCTTGCACCAGAAGAAACAAACAATGTCTTTCCTGCTGTGATTCT
CTCTAATTTTCAATCACCAAACCAAACTGCTTCTTCAAATATACATGAAGTGGTCAGTGCTGTTCCTGTTGTTTCAGCTCCAATGAAGCCTCTTTCCGGG
GTTTCACTCAGTTCTTTGTCAACCGCTATGAAAGTCGCCACTGAATCCATTCAACTTACACAAGCGACCCATCCTATAAGGAGGCTTTATATGGAGAACA
TTCCAGCTTCAGCCTCAGAGAAAGCTGTGATGGACTGTCTTAATAACTTTTTGATTTCTTCAGGCGTCCATCATATCCAAGGAACCCAACCATGTATAAG
CTGCATTAGGCAAAAAGAAAAGGGCCAAGCTCTTGTGGAATTTCTGACTCCAGAGGATGCTTCAGCAGCTCTCTCTTTTGATGGCTGTTCCTTCTCAGGC
TCCATTATCAAAGTCAGACGGCCCAAAGACTTTATTGAAGTGGCAACTGGTGAACTAGAAAAATCAGCAGCTGCAATTGATGCAATTGGTGATATTGTTA
AGGATTCACCTCACAAGATTTTCATTGGTGGAATTTCAAAGGTTCTTTCTTCTAAAATGCTCATGGAGATTGCTAGTGCCTTTGGACCTCTGAAGGCATA
CCAGTTTGAGAATAGTAAAGATCCTGATGAGCCATTTGCCTTCCTAGAGTATGCAGACGAATCGGTTACTTTCAAGGCTTGTGCGGGTCTCAATGGTATG
AAGTTAGGAGGGCAAGTAATAACTGCCATTCAAGCTGTTCCAAATGCATCCTCCTCGGGAAGTGATGGAAATTCACAATTTGGCCAGATCTCTCAGCATG
CAAAGGCACTTCTTGAGAAGCCTACAGAAGTCTTAAAGCTTAAAAATGTGTTTGATTCAGAAAGCCTTTCATCCCTATCTAACACGGAAGTTGAAGAAGT
ATTGGAAGATGTGCGTTTAGAGTGTGCCAGGTTTGGCTCTGTTAAATCCATTAATGTTGTCAAGTATGCTGCAATTACCATATCCACTTCAAAATCATGC
GAATTCAATGATGATACGGTATCTGCTGAAGCTACACAAAGCTTAGGCTGTGATGGAACAAATCCTAAAACAAGGAACATCAGAGGATCTATTGACCAAA
AGTTTATGGAAGGCAACGGCATTGGTGATGATAAACCAGCAAGTGATGTCATGGAGGATGAGCCATGCCAACCAGGTCAGGTTGACAGTGATATGGCTGT
TCAAGACTTAGCATGCAAGAGTTCATCTGATTCTCAAGAACCCCCTCAAGATGTGTCAGACAGCAATGTTGACAAGGTCACTGATGACATTGAAATTGAG
GAAGTCGATGTGGAAAACAAATCAACAGCTGGAGAAGATTTGAATTTGAAGGAGGTGGGAGATAACAAATTAATGGCTGGAGAAGAGTTGAATCTGGAGG
AAGTCAGTGGAGATGTTGAAAAGGCTATTGTGAATGATAGCATGGAAATGAAACCAAATTCTATTGAGAAGGGAGATTGCAAGGAACAGGATTGTAATCT
TGGACTCATTTTTGAGCGGGGATGTGTTTTTGTGGAGTTCAGAAGAACAGAAGCCGCATGCATGGCAGCGCATTGTTTACATGGAAGGTTATTTGATGAC
CGTGCTGTGGTGGTGGAATATTTTCCTCTTGATATTTACCTTGCCAGATTCCCGAAGTGA
AA sequence
>Potri.010G068400.14 pacid=42796878 polypeptide=Potri.010G068400.14.p locus=Potri.010G068400 ID=Potri.010G068400.14.v4.1 annot-version=v4.1
MMSRSSRHKDKYGRSSEMSQDHQYEGTAARTRPFSFDEIMSIRKNKKASEILEGELKDILGGVINEKASDHRSERGNGHNEESSTGLRQHLSEEHGKASY
RKKEDNVSMKEDYIAKGRDRDVRDSETKSKAKMNEDMRTEVKEKTNEKIHDRRKGDKRPSNISESEAVKKHSREVQKDRHVDKSRGKSERERKEKYRNGI
DDKSRDRNAAKKHDLGKGHHLETSERKERKESSKSHHEELRLKRRRSRSREHEDRNRRSISLSPRAHKRGSYHKREHVELSSHSVKERSGRQQSDAENNQ
LTNSSSSRHQRRHGGFASGLGGYSPRKRKTEAAIKTPSPAKRSPEKKSAKWDLAPEETNNVFPAVILSNFQSPNQTASSNIHEVVSAVPVVSAPMKPLSG
VSLSSLSTAMKVATESIQLTQATHPIRRLYMENIPASASEKAVMDCLNNFLISSGVHHIQGTQPCISCIRQKEKGQALVEFLTPEDASAALSFDGCSFSG
SIIKVRRPKDFIEVATGELEKSAAAIDAIGDIVKDSPHKIFIGGISKVLSSKMLMEIASAFGPLKAYQFENSKDPDEPFAFLEYADESVTFKACAGLNGM
KLGGQVITAIQAVPNASSSGSDGNSQFGQISQHAKALLEKPTEVLKLKNVFDSESLSSLSNTEVEEVLEDVRLECARFGSVKSINVVKYAAITISTSKSC
EFNDDTVSAEATQSLGCDGTNPKTRNIRGSIDQKFMEGNGIGDDKPASDVMEDEPCQPGQVDSDMAVQDLACKSSSDSQEPPQDVSDSNVDKVTDDIEIE
EVDVENKSTAGEDLNLKEVGDNKLMAGEELNLEEVSGDVEKAIVNDSMEMKPNSIEKGDCKEQDCNLGLIFERGCVFVEFRRTEAACMAAHCLHGRLFDD
RAVVVEYFPLDIYLARFPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33435 RNA-binding (RRM/RBD/RNP motif... Potri.010G068400
[exp]
0 1
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.002G072900
[exp]
3.46 0.8544 SEU.1
AT5G27270 EMB976 EMBRYO DEFECTIVE 976, Tetratri... Potri.019G049400
[exp]
3.74 0.8509
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.007G003400
[exp]
5.09 0.8835 HAC901,Pt-HAC1.4
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.003G194000
[exp]
8.00 0.8118
AT3G06010 ATCHR12 Homeotic gene regulator (.1) Potri.010G091200
[exp]
8.94 0.8507
AT3G54670 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE... Potri.005G224900
[exp]
9.48 0.8736 CPC902,TTN8.3
AT5G39570 unknown protein Potri.017G087200
[exp]
9.94 0.8115
AT2G45460 FHA SMAD/FHA domain-containing pro... Potri.014G071400
[exp]
10.58 0.8596
AT2G27170 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE... Potri.009G155200
[exp]
11.48 0.8599 TTN8.2
AT1G01930 C2H2ZnF zinc finger protein-related (.... Potri.002G149800
[exp]
13.41 0.8564

Potri.010G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.