Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NPGR2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 709 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 526 / 2e-178 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 515 / 3e-174 NPGR1 no pollen germination related 1 (.1) AT3G11540 44 / 0.0005 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169500 [exp] 1244 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 843 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 552 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 551 / 0 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 541 / 0 AT1G27460 868 / 0.0 no pollen germination related 1 (.1) Potri.013G051400 [exp] 46 / 0.0001 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 45 / 0.0003 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023748 [exp] 1036 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 1003 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 736 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 726 / 0 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 726 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 716 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10029803 [exp] 521 / 4e-176 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 520 / 6e-176 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 503 / 2e-169 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 497 / 3e-167 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G068700.7 pacid=42797564 polypeptide=Potri.010G068700.7.p locus=Potri.010G068700 ID=Potri.010G068700.7.v4.1 annot-version=v4.1 ATGAGACTTAAGAATTGGATAAAAAGGTGGGGACTTGGCGTTAGAGGGAAATTGTGGAAGATGATGAAGTGCATACGTTCTGGGGAGCAGCTACGATTAG ATGACATGGCTTCCTCTTCAGAGTCCTTGGCAACTCGGGACTACTCAGTCAGTTATTCATCTCAAGCTGCTGGGGTAGATACAAAGGTTGAGAATAGCAA CATTGAAGAAGCAGAGTCATCCCTTCGTGAGAGTGGTTATCTCAACTATGAGGAAGCTAGAGCATTATTGGGAAGGCTTGAGTATCAAAAGGGAAATATA GAGGCAGCACTTCAAGTGTTTGAGGGAATTGACATTGCTTCTGTGAGCTCTAAAATAAAACTCTCCCTTTCTAGAAGATGTGAACAAAATCGACGTCGTT CTCAAAGTGATGCTGCCCCTCCCATGTCTATGCATGCTATTAGCTTACTTCTCGAAGCTATTTTTCTCAAAGTAAAATCGTTGCAGGGTCTTGGACAGTT TGAAGAAGCTGCGCAATCATGCAAAGTGATTTTGGACACTATTGAGACTGCATTGCCAGAAGGCATACCAGAAAGTGTTTCTGCAGATTGTAAACTACAG GATATTCTAAACAAAGCTGTTGAACTGCTTCCAGAGTTATGGAAACTCACTGGGTCTCCCCAAGAAGCTATCTTGTCGTACCGCCGGGCTCTCCTATATT ATTGGAATCTGGATACAGAGACCACATCTAAGATAGAAAAGGAACTTGCCGTTTTTCTGTTGTATAGTGGTAGCGATGCAAGTCCTCCTAATCTCCGTTC ACAGGTGGACGGATCTTTTGTACCAAGAAACAATATAGAAGAGGCTATTCTTCTGTTATTAATTCTATTAAGAAAATTTGCTGTCAAAAAGATTGAGTGG GACCCGACAATCATGTATCACCTTTCTTTTGCACTATCTATTTCAGGGGAACAGAGAGCACTGGCCCATCAGGTGGAAGAGTTGCTTCCAGGGATCATGG AAAGGAGAGAAAGATATAGCATTCTCGCTCTCTGTTATCATGGAGAGGGTGAGGAAATGATTGCTTTGAATCTTCTGAGGAATTTGCTGTTTAACAGAGG AAACCCAGACTGTGTTTTGGAATTATTATTGGCTTCAAACATTTGCGCAAAGAATACGGTTTGCGTGGAAGAAGGGATAAGTTATGCTTCCAGGGCGCTT TCTGAGTTGTGTGGTAGATGCAACCAGATGGAAAGTGTTGCAAACTGCTTACAGGGTATTTTACTGTCAACTCAATCCAGATCAGTTGCTTCTGATTCTG AGAGAATTTCAAAACAAAGTGAAGCACTTGAGATGCTGGAAAGTGCTGAAAAAATGATGATAGAAAGAGATCCATCTATCATATTCCATCTCAGTCTAGA AAATGCTGAGCAGAGAAAGTTGGATGCTGCCCTTTACCATGCGAAGCAGCTTTTGAAACTGGAGGCTGGGTCTAGTGTTAGAAGTTATATCCTTTTGGCT CGAATATTGTCAGCTCAAAAACGGTTTGTTGACGCAGAGAATGTAATCAATGCTGCTCTAGATCAAACTGGGAAGTGGGATCAAGGGGAACTGCTGCGGA CAAAAGCTAAACTCCAGATTGCACAGGGGCAATTAAAGAAGGCCATAGAGACCTACACTCGTCTTCTTGCTATCATCCAAATTCAAACTAAAAGCTTAGG TGCTGGGAAGAAGCTTGCGAAGAATCAGAGAAACAGCTGGAGTTTGGAAATGGAAACATGGCACGATCTGGCTAATGTGTACACAAGTTTGTCACAGTGG CGGGATGCTGAGGTCTGCCTTTCAAAATCAAAGACTCTCAGCCCTTATTCTGCTTCAAGATGGCACTCCACAGGTTTACTCTATGAAGCAAAGGGCTTGC ATCAAGAGGCTCTGAAAGCATTCAAGGCAGCATTAGATGCGGAACCCAACCATGTCCCAAGCTTGGTATCCACTGCCTGTGTCCTCAGGCGACTTGGTAG TCAATCAATACCAATTATCAGAAGCTTTCTCACTGATGCTATTCGACTTGACAAAGCAAACCATTCTGCATGGTACAACCTTGGACTACTCTACAAGGCT GATCCCAGTGCATCAGCACTTGAGGCAGCCGAATGCTTCGAGGCTGCAGCGTTTCTGGAAGATTCTGCACCAGTTGAGTCCTTCAGATGA
AA sequence Show only first row Show all	>Potri.010G068700.7 pacid=42797564 polypeptide=Potri.010G068700.7.p locus=Potri.010G068700 ID=Potri.010G068700.7.v4.1 annot-version=v4.1 MRLKNWIKRWGLGVRGKLWKMMKCIRSGEQLRLDDMASSSESLATRDYSVSYSSQAAGVDTKVENSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNI EAALQVFEGIDIASVSSKIKLSLSRRCEQNRRRSQSDAAPPMSMHAISLLLEAIFLKVKSLQGLGQFEEAAQSCKVILDTIETALPEGIPESVSADCKLQ DILNKAVELLPELWKLTGSPQEAILSYRRALLYYWNLDTETTSKIEKELAVFLLYSGSDASPPNLRSQVDGSFVPRNNIEEAILLLLILLRKFAVKKIEW DPTIMYHLSFALSISGEQRALAHQVEELLPGIMERRERYSILALCYHGEGEEMIALNLLRNLLFNRGNPDCVLELLLASNICAKNTVCVEEGISYASRAL SELCGRCNQMESVANCLQGILLSTQSRSVASDSERISKQSEALEMLESAEKMMIERDPSIIFHLSLENAEQRKLDAALYHAKQLLKLEAGSSVRSYILLA RILSAQKRFVDAENVINAALDQTGKWDQGELLRTKAKLQIAQGQLKKAIETYTRLLAIIQIQTKSLGAGKKLAKNQRNSWSLEMETWHDLANVYTSLSQW RDAEVCLSKSKTLSPYSASRWHSTGLLYEAKGLHQEALKAFKAALDAEPNHVPSLVSTACVLRRLGSQSIPIIRSFLTDAIRLDKANHSAWYNLGLLYKA DPSASALEAAECFEAAAFLEDSAPVESFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	0	1	Pt-NPGR2.1
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	2.00	0.8282
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	3.46	0.7996
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	7.21	0.7180
AT5G59350			unknown protein		Potri.001G238300 [exp]	7.61	0.7442
AT5G02640			unknown protein		Potri.016G081600 [exp]	8.94	0.7789
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	9.16	0.7650
AT3G08490			unknown protein		Potri.001G267200 [exp]	9.16	0.8156
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	9.48	0.7906
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	10.19	0.7680
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	13.30	0.8016

Compare expression of checked genes

Potri.010G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.