Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23440 94 / 5e-26 EDA6, MEE37 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1) AT5G44060 92 / 2e-24 unknown protein AT1G04000 85 / 6e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259400 [exp] 93 / 4e-25 AT1G04000 87 / 2e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011797 [exp] 137 / 2e-42 AT5G44060 85 / 1e-21 unknown protein Lus10003619 [exp] 96 / 3e-26 AT5G44060 100 / 2e-27 unknown protein Lus10008237 [exp] 53 / 1e-09 AT1G04000 79 / 2e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G068800.1 pacid=42799167 polypeptide=Potri.010G068800.1.p locus=Potri.010G068800 ID=Potri.010G068800.1.v4.1 annot-version=v4.1 ATGAGTTACCACTCACGTAGGACTTTAACACCTGGCGCCTCAAAGAAGCGCAAAGAGAGAGAGGCACTGTCTTATTCAATGAAGCCGAAATCGGCTTCGG CTCAACCAGCTTCAAATCTTGACGAGCCGATTTCCTCTAATCGGCTACTAGCCGGCTACATGGCGTATGAGTTCTTGACTGAAGGCACCCTTCTTGGGCA GAAGTTCGATCCGGCTCGAGCAGAAGTCACGTCTCTAGCTGGCGGCTCGGTGGAGTGCTCGAAGAGAGGAGAGCCGGGAAAGAAGAAGGAACACAAGAGT TACGCTGAGGTGGCAAGCATTTTAAAGGGTGAAGGGGCCCACATTCCCGGGATTGTTAATCCTTGCCAGCTGGCCAGGTGGATCCAGATGTAG
AA sequence Show only first row Show all	>Potri.010G068800.1 pacid=42799167 polypeptide=Potri.010G068800.1.p locus=Potri.010G068800 ID=Potri.010G068800.1.v4.1 annot-version=v4.1 MSYHSRRTLTPGASKKRKEREALSYSMKPKSASAQPASNLDEPISSNRLLAGYMAYEFLTEGTLLGQKFDPARAEVTSLAGGSVECSKRGEPGKKKEHKS YAEVASILKGEGAHIPGIVNPCQLARWIQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G027400 [exp]	1.41	0.9493
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G070500 [exp]	2.44	0.9429
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.014G038700 [exp]	4.00	0.9432
					Potri.007G076600 [exp]	6.32	0.9378
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	6.92	0.9417
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	7.14	0.9145
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	8.77	0.9177
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Potri.005G160800 [exp]	9.16	0.9064
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	9.38	0.9211	ERF6
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	13.41	0.9176

Compare expression of checked genes

Potri.010G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.