Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23430 1069 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G68740 607 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 447 / 1e-146 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 442 / 1e-144 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 442 / 7e-144 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 432 / 1e-140 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 417 / 1e-134 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 412 / 4e-132 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 410 / 2e-131 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 401 / 9e-129 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169400 [exp] 1314 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 757 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 749 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 451 / 3e-147 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 419 / 3e-135 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 415 / 1e-133 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 414 / 6e-133 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 409 / 3e-131 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 400 / 4e-128 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021164 [exp] 1176 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 1165 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10019155 [exp] 693 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 692 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 399 / 5e-127 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 379 / 1e-119 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 377 / 5e-119 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 373 / 1e-117 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 372 / 5e-117 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 365 / 1e-114 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.010G069000.2 pacid=42799662 polypeptide=Potri.010G069000.2.p locus=Potri.010G069000 ID=Potri.010G069000.2.v4.1 annot-version=v4.1 ATGGTGAAGTTTTCAAAGGAGCTTGAAGCTCAACTAATCCCAGAATGGAAGGACGCCTTTGTAAACTACTGGCAACTCAAAAAACAGATAAAGAAGATCA AACTCTCACAAAAACCCGCACATCCCCACCGTGTTCTTGATCATGAATATGGTCTCTCGATTTTTGATCCCATTCGCTCCCTCGCCAATAATATATCCAG CAAGCTCTTCCACTCTGATACCATGACCGAAATCATTCAGGTAAGGAGCAAGAGCATGGAGGATGGTGATGAAGAAGTGTACCAAACTGAGCTTGTTCAA TTGTTCTCAGAAGAAGATGAGGTGAGGGTGTTTTTCGAGGGATTGGATGAGGAGCTAAATAAAGTGAACCAGTTTTACAAGACCAAAGAGAGTGAGTTTC TTGAAAGAGGAGAGATTCTGAACAAGCAGCTAGAGATTTTGCTGGACCTCAAACGGATCCTCAACGAACGCCGCCGTAAGCCGAACGCTGGGGTTCTTTC TCGTTCTTGGTCATCCTCACCTCGGAACTCTGATTTTTCTGAGAGTGCAAGTGAATCAAATGAGATCTCAACAGATTCACAAACTGATGAAATCATCGCA GCACTAGAGAAAAATGGTATCAATTTCATCAATTCGGCGACAAGAACGAAAACAAAGAAAGGGAAACCTAAGATGGCAATGAGGATTGACATTCCGGCGA CGACACCAACACGAACAATCACAGCCGTAACATCGATGTTGTGGGAAGATTTGGTCAATAATCCTAAAAAAGAAGGTGCTGGTGATTTCATTAATAGAAA GAAGATCCAGTGTGCTGAGAAGATGATTAGAGGTGCATTTGTGGAGCTCTATAGAGGCCTTGGTCTACTTAAAACGTACAGCTCATTGAACATGGTGGCC TTCACGAAAATATTGAAGAAATTCGACAAGGTATCCAATCAGCAGGCATCGGCAAGTTACTTGAAAGTAGTGAAGAGATCCCACTTTATTAGCTCCGATA AGATTGTTAGGCTAATGGATGATGTGGAGTCCATATTCACAAAGCACTTCGCCAACAATGACAGGAAAAAGGCTATGAAGTTCCTGAGACCCCAGAGACA AAGAGAGTCTCACATGGTCACTTTTTTCGTTGGATTATTTACTGGCTGTTTTGTATCACTGTTCAGTGTATACGCAATCTTGGCTCACTTATCTGGTATT TTTAGGCCAAATTCTGAGAGATCATATGTGGAAACTGTCTACCCTGTTTTCAGTGTCTTTGCCTTGTTAAGTTTGCACTTGTTTATGTATGGGTGCAACC TCCTCATGTGGAAGGGAACAAGGATCAACTACAACTTCATTTTTGAATTCCAACCCAGCACAGCCCTCAAGTACAGAGACGCCTTTCTCATTTGCACCAC CTTCATGACCTCGGTGGTTGCGGCAATGGTAATCCATCTTCTCTTAAGGGCTAGCGGTTTTTCGCCAAACCATGTTGATGCCATTCCTGGGATTCTCCTC CTGATTTTTGTTTTTGTGCTCATCTGCCCATTTGACATCTTCTATCGTCCAACACGTTATTGCTTCGTCCGTATTATAAGAAACACAATCTGCTCTCCAT TTTACAAGGTTTTGATGGTCGACTTTTTCATGGCAGACCAACTTACTAGCCAGATTCCATTAATGAGGCACATGGAATCCACAGCTTGTTACTTTCTAGC TGGGAGTTTCAAGACTCATAGATATGAAACCTGCAATTCCGGAAGGCTATACAGGGAGCTTGCTTATGTCATTTCATTTTTGCCTTACTATTGGCGTGCT ATGCAGTGTGCAAGAAGATGGTTTGATGAAAGTGACCTGAACCATTTGGCTAACATGGGGAAGTACGTTTCTGCCATGGTGGCAGCCGGTGCGAGGATTA CTTACGCTACGCAGAAGAACCACCTATGGTTAGGTATAGTCCTGGTTACTTCTGTGTTTGCTACCTTATATCAATTGTACTGGGATTTTGTTAAGGACTG GGGACTTCTCAACTCTAAATCCAAGAATCTGTGGCTAAGAGATGATTTGATTCTAAAGAACAAAAGCGTCTATTACATGTCCATCGCCCTGAACATAGTT CTTAGAGTTGTTTGGGTGGAGACTGTCATGGGGTTCCGCTTCAATAATGAGGTTGAGACACGTATGTTAGATTTTTTCTTGGCTTCTTTGGAGGTAATTC GACGTGGCCATTGGAATTTTTACAGGTTGGAGAATGAACATCTGAATAATGTTGGAAAGTTCAGGGCAGTGAAGGCAGTTCCGCTGCCATTCCGCGAGAC TGATTCTGATGGCTGA
AA sequence Show only first row Show all	>Potri.010G069000.2 pacid=42799662 polypeptide=Potri.010G069000.2.p locus=Potri.010G069000 ID=Potri.010G069000.2.v4.1 annot-version=v4.1 MVKFSKELEAQLIPEWKDAFVNYWQLKKQIKKIKLSQKPAHPHRVLDHEYGLSIFDPIRSLANNISSKLFHSDTMTEIIQVRSKSMEDGDEEVYQTELVQ LFSEEDEVRVFFEGLDEELNKVNQFYKTKESEFLERGEILNKQLEILLDLKRILNERRRKPNAGVLSRSWSSSPRNSDFSESASESNEISTDSQTDEIIA ALEKNGINFINSATRTKTKKGKPKMAMRIDIPATTPTRTITAVTSMLWEDLVNNPKKEGAGDFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMVA FTKILKKFDKVSNQQASASYLKVVKRSHFISSDKIVRLMDDVESIFTKHFANNDRKKAMKFLRPQRQRESHMVTFFVGLFTGCFVSLFSVYAILAHLSGI FRPNSERSYVETVYPVFSVFALLSLHLFMYGCNLLMWKGTRINYNFIFEFQPSTALKYRDAFLICTTFMTSVVAAMVIHLLLRASGFSPNHVDAIPGILL LIFVFVLICPFDIFYRPTRYCFVRIIRNTICSPFYKVLMVDFFMADQLTSQIPLMRHMESTACYFLAGSFKTHRYETCNSGRLYRELAYVISFLPYYWRA MQCARRWFDESDLNHLANMGKYVSAMVAAGARITYATQKNHLWLGIVLVTSVFATLYQLYWDFVKDWGLLNSKSKNLWLRDDLILKNKSVYYMSIALNIV LRVVWVETVMGFRFNNEVETRMLDFFLASLEVIRRGHWNFYRLENEHLNNVGKFRAVKAVPLPFRETDSDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	2.00	0.8697
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.007G100100 [exp]	2.82	0.8327
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	3.16	0.8371	STGA1.3
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	3.46	0.8575
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	6.24	0.8108
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	7.48	0.8330
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	8.12	0.8139
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	8.48	0.8312	Pt-STGA1.4
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.007G060300 [exp]	8.60	0.7519	Pt-ATPLDDELTAA.1
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	9.79	0.7986

Compare expression of checked genes

Potri.010G069000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.