Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23410 851 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 809 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 719 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 542 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169300 [exp] 1212 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 541 / 0 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 308 / 6e-96 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 50 / 9e-06 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 49 / 1e-05 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022903 [exp] 822 / 0 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 798 / 0 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 788 / 0 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 785 / 0 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 575 / 0 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10035673 [exp] 546 / 0 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 524 / 2e-177 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011801 [exp] 269 / 9e-84 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 174 / 2e-49 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00890 [poplar] [flax] FAD_binding_2 FAD binding domain CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.010G069100.2 pacid=42797042 polypeptide=Potri.010G069100.2.p locus=Potri.010G069100 ID=Potri.010G069100.2.v4.1 annot-version=v4.1 ATGAGAAGAGAGTGCCATCCTTTGTTGAGGGGAGGGAGAAATAGAGAGAGCAAATATAACCATGGGCTCTCTTCAGCTGAGATGGAATCGCTTTCTAGCC TCTGCGAGACCATATTGCCTTCTCTGTCACCGATTCCCAAGTTTGACGGGAAGCAAAACCAACCTACCAAGGCCGTGCAGGCCTTCTACAGAGCCTCTGC CTCTCAAACGCCTATGCCTGATGAGATGGCAGAGCTTTTAACGAAGAGGGGATTGCCAGAGGCTGTGTTCATGGTAAGATTGGTTCTATGGCTTCTATCC ACTAGGTTGGGTACGTTTTTGCTTTGTGGGTCTCTTTGTTTTGGGGAGAAATGGCCATACTTTAAGAATTTCTCAAGCATCCCTTTGGACAAGAAGGAGA GGGTTTTGCAGAAATGGTTCAAACATAGGTTTTTTACACCTATCAGAACTGCCTTCGTATATGTCAAGATCTTGGTCCTCTACGTCTTCTTCTCTCGGGT TGATGAAAAAGGTGACAACCCAGCATGGGAAGCCATTGAATATAATGCAGGCACTGATGAAAATCCAGACCAGGTTCCTAAAGAGAGGCCCCTTCAAAAG GGATTGATAGATACTAATCAAGAAACTGACTCCACCCTTCTACACTCTCTTAAAGAGAAAGGACTAAGAGTTACTCAAGATCCTCGAAAGAACCTTTATA AAATCAAATGTGATGTTGTCATTGTTGGCTCCGGTTGTGGTGGTGGAGTTGCCGCAGCTGTTCTTGCAGCTTCTGGGCAGAAGGTGTTTGTTCTTGAGAA AGGAAACTACTTTACTGCTACCGATTATTCTGGTTTGGAAGGCCCTTCCATGGACCAACTATATGAATCAGGTGGAAAACTTGCGACTACTGATGCAGAG ATGCTGATCATGGCAGGATCAGCAGTCGGAGGAGGTTCTGCTGTTAACTGGTCAGCATCCATCAAAACACCAAACTCTGTGCTTCAGGAATGGACTGGGA CCCAGAAAATCCCACTTTTCGGAAGTTCTGAATATTTTTCTGCCATGGATGCTGTTTGTACTAGAATAGGAGTCACAGAGAGCTGTGGAGAGGAAGGATT TCAAAATCAAGTACTTCGGAAAGGGTGCGAGTCCCTTGGTATTCCTGTCAAAACCGTCCCACGAAATTCCTCAGAGAGGCATTATTGTGGCTCTTGCGGT TATGGTTGTCTAAAAGGAGAGAAGAAAGGGACTGATCGTACATGGCTGGTCGATGCTGTTGATCATGGGGCAGTGATCTTAACAGGATGCAAAGCAGAGA GATTCATGTTGGAAAAGAACGAGGGTGGAAGTAAGAGAAAAAAGAAATGCGTGGGAGTGACCGCAAAAATTGTAAACAACAATATCAGAACGAGATTGCA AATTGAGGCCAAGGTAACAATCTCAGCATGCGGAGCTCTTTTGACACCCCCTTTAATGATCTCCAGTGGATTGAAGAATCAGAATATAGGCCGGAACCTT CATCTACACCCTGTACTAATGGCTTGGGGATACTTTCCAGAGTCAAATTCAGAGTTCAAGGGGAAAGTATACGAGGGTGGAATAATCACAGCAGTTCATG AAGTGTTAACAGGAGACTCCAACGCGAGGGCAATTATAGAAACTCCTGCATTAGGGCCTTCTTCATTTGTTGCGCTGTGTCCCTGGGTGTCTGGACATGA CATGAAGGACAGAATGGCGAAGTATGCAAGAACTGCTCACCTCATAGCAATAATAAGAGACAGCGGGTCCGGAAAAGTTACGACAGAGGGAAGGATATCC TATAATTTAGATGCAATGGACAAAGAGAATCTCAAGGCAGGGCTGCGGCAGGCATTGAGGATTTTAGTTGCAGCAGGAGCTGTCGAAGTGGGTACCCATC GAAGTGATGGGCAGAGGATCAAATGTAGAGGGATCAAAAAAGAGGATCTGGAGGAATTTTTGGACACAGTTTATGCAACTGCAGGGCCACTGTCACCGGT AGAGGACTGGATGCTGTACACCTCAGCCCATCAAATGGGGAGCTGCAGGATGGGGATTAATAAAAAAGAAGGCGCGGTTGACGAGAACGGAGAGAGTTGG GAAGCAGAGGGCCTATTTGTTTGTGATGCTAGTGTTTTGCCAAGTGCTGTCGGTGTTAATCCTATGATCACAATCCAGTCCACTGCTTACTGTCTGTCGA AGAAAATTGCAGAGTCATTATGCAGAGATTAG
AA sequence Show only first row Show all	>Potri.010G069100.2 pacid=42797042 polypeptide=Potri.010G069100.2.p locus=Potri.010G069100 ID=Potri.010G069100.2.v4.1 annot-version=v4.1 MRRECHPLLRGGRNRESKYNHGLSSAEMESLSSLCETILPSLSPIPKFDGKQNQPTKAVQAFYRASASQTPMPDEMAELLTKRGLPEAVFMVRLVLWLLS TRLGTFLLCGSLCFGEKWPYFKNFSSIPLDKKERVLQKWFKHRFFTPIRTAFVYVKILVLYVFFSRVDEKGDNPAWEAIEYNAGTDENPDQVPKERPLQK GLIDTNQETDSTLLHSLKEKGLRVTQDPRKNLYKIKCDVVIVGSGCGGGVAAAVLAASGQKVFVLEKGNYFTATDYSGLEGPSMDQLYESGGKLATTDAE MLIMAGSAVGGGSAVNWSASIKTPNSVLQEWTGTQKIPLFGSSEYFSAMDAVCTRIGVTESCGEEGFQNQVLRKGCESLGIPVKTVPRNSSERHYCGSCG YGCLKGEKKGTDRTWLVDAVDHGAVILTGCKAERFMLEKNEGGSKRKKKCVGVTAKIVNNNIRTRLQIEAKVTISACGALLTPPLMISSGLKNQNIGRNL HLHPVLMAWGYFPESNSEFKGKVYEGGIITAVHEVLTGDSNARAIIETPALGPSSFVALCPWVSGHDMKDRMAKYARTAHLIAIIRDSGSGKVTTEGRIS YNLDAMDKENLKAGLRQALRILVAAGAVEVGTHRSDGQRIKCRGIKKEDLEEFLDTVYATAGPLSPVEDWMLYTSAHQMGSCRMGINKKEGAVDENGESW EAEGLFVCDASVLPSAVGVNPMITIQSTAYCLSKKIAESLCRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.010G069100 [exp]	0	1
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Potri.006G117800 [exp]	4.00	0.8014
AT1G07850			Protein of unknown function (D...		Potri.009G026300 [exp]	7.14	0.8004
AT1G07080			Thioredoxin superfamily protei...		Potri.006G103000 [exp]	7.21	0.7880
AT2G32900		ATZW10	centromere/kinetochore protein...		Potri.002G223600 [exp]	9.69	0.7702	Pt-ZW10.1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	10.39	0.7993
					Potri.006G112400 [exp]	11.48	0.8454
AT1G24560			unknown protein		Potri.008G184600 [exp]	11.48	0.8237
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.001G381500 [exp]	18.00	0.7874
AT4G22560			unknown protein		Potri.001G121600 [exp]	18.02	0.8207
AT1G34350			unknown protein		Potri.019G085500 [exp]	19.74	0.8335

Compare expression of checked genes

Potri.010G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.