Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14310 830 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169200 [exp] 1396 / 0 AT4G14310 814 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011802 [exp] 944 / 0 AT4G14310 819 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021166 [exp] 848 / 0 AT4G14310 787 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G069200.1 pacid=42798673 polypeptide=Potri.010G069200.1.p locus=Potri.010G069200 ID=Potri.010G069200.1.v4.1 annot-version=v4.1 ATGTCGGCCTCCTCGGCTCGTCGGTTAAAAGGCCGAAATGGCGTCGCTGACCCCACAGCAGCTTCAAAACCAACCAAAGCCCTAACTCCAATCTCAATCC CAGATAAAAACCCTAATTCCACTATTAAAAGGTCGCTCTCCGGCAAAGAGAACCCCGCCAGACCGAACTCTCGGGCCCAGAAGTCCGCAATTCGGCCAGT GCCACGTGTTGACAAGGCTGCTGTAGGAGATGGCAGCGAAGGGCGCATGCGGTGGTCGACGTCATCGGCCCCAAGAGGTAGGAGTCCAAGCCCTTCTGAA TTTATTAGGGTTTTTAGGGATTCTAGGGTTTCCACAGGGGGCAGTGATAATCGAGTGGTGTCGAGAGCAGAGAAGAGTGGGCTTAGGGGTTTGAAAGAAA ATGGTGGGTTTAGTGGGGAATTGAAGAAAAGGAATGGACTTTGCAAAGGGAATGATTTGAAAATATTAGAAAGTAAAAAACAGTTACGCGGGCTTAAGGT TTTGAATGATAACTGTAATAAAGAAGTTATCTTGCGAAAATCAAGAGAGTTTGACTCAAATTTAGATTCAAAAGTTGCAAATGGTGGTAAATTTGATAAG GTATATGTTGATAAATCTGGGTCTGAGGTTAAATTTGACAGCTTTAAAGACTCTAGTGAGAAATCTTATAGTAAAGGTATGGTTTCGGAGAACTTGAAAG AGAAGGGTTTGAGTGATGAAGGGAAAGAAAGCAATGCTGGTGTTAAATATCCAAGCAAGCTTCATGAGAAATTGGCTTTTTTAGAAGGGAAAGTGAAGAG GATTACATCAGATATAAAAAAGACCAAGGAAATGTTGGATATGAATAACTCTGATGCATCCAAGGTGATACTATTGAATATTCAAGATAAAATTTCAGGT ATTGAGAAGGCAATTGGAAACGATGCGGGTAGCAGTTCATCAAAAAGTAGTGGGAATGATTCTGGAACAATTGTGGTTGTAGAGAAGAATGAAATTGAGA AAGTTGAGAATGTGAAGAGCCAAGCTAAAGGGTTGAATACTGAGGAACTTGAAGAAAGACTCATTCCTCATCATAAGTTGCTTAGAAACCGAACATCGCT GAAGGCACCGATGGCAAGTTGTCAAAGTCATAATGTATCTAATGCTGATGAGTATGGCTGTGAGTTAAAGGTGGAAGAGAAGTTGTCGAGCCCTATTGAA GAGAATCCAATAGCACTCGAGTTTTTGGATTCCCTTAGTAAAGAGGATGGTAAAGTAATCGTGAGGGATGCCAAGGTAGATCTTGAGTCTTTTGAGGTTC AAGAAATGGGTGATGGTTCAGCTTCAGGAAACCAAGACTCTTCAAACATGTTCAATCCCAAGTGCGAGGAGGACCTTCTTCTTACAACTGACGAAACACT TGATGAGTTTGATGATCAGGAAAATAGAAATACATTCATAATTGGCGAGGAAACCGAAGATACTTGTGTCTATCAGGTGAATGAAATAGGCACCAAAAGT TCAACAGGAGGATGGTTTGTGTCAGAGGGAGAGTCAGTTCTTACTCATGATGATGGGTCCTGCTCTTTTTATGATATTGCTAATTGTGAGGAGAAGGCAG AATACAAGCCCCCAGCAGGAGTCTCGCCCAATATATGGAGAGATTGCTGGATTATTCGTGCACCCGGTGCTGATGGCTGCTCGGGGAGATATGTCGTGGC TGCATCTGCTGGGAATACTCTTGATTCAGGCTTTTGTTCATGGGATTTCTACGCCAAAGATGTGCGAGCTTTTCACATTGAGGATGGAGGAACAACTGCC TCAAGAACAGTACTTGGTGCCCTACCCAATAATACCACATCTAGGAGAAATGCTTTGTCTAGCATATTGTTACCAGAAACTCAACAATGGTGGTATAAAC CATGCGGACCTCTTATGGTCTCTACTGCCAGCTCTCAAAAAGTAGTCAAAATACATGATATTCGAGATGGAGAACAAATAATGAAATGGGAGGTGCAGAA ACCTGTGCTAGCAATGGATTATTCAAGCCCTTTGCAGTGGAGAAACAAAGGGAAAGTGGTTGTGGCTGAGGCAGAAACAATTTCTGTGTGGGATGTGAAC TCTCTTAATCCTCAATCATTGTTGTCTGTTTCTTTGGCTGGTCGAAAAATCTCAGCTCTTCACGTGATCAACACTGATGCTGAACTAGGTGGTGGGGTTA GGCAAAGAGCAACTTCAGCAGAAGCTGAGGGAAATGATGGTGTGTTTTGCACCCCTGATTCTATCAATGTTTTAGACTTTCGCAATCCATCTGGTATAGG TCTCAAGATACCAAAAATAGGTGTCAGTGTGCAATCAGTTTTCACTCGTGGAGATTCGATCTACATTGGCTGTGCCAATACGAGGCTTGCAGGGAAAAAA CATCCTTGTTCACAGGTGCAACATTTCTCACTGCGCAAGCAAAGGCTAGTCAACACTTACTCTCTGCCAGAATCCAATGCTCACTCCCATCACTCAGCCA TAACTCAGGTTTGGGGAAACTCAAAACTTGTAATGGGTGTTTGTGGGCTGGGGCTATTTGCATTTGATGCCTTGAAGGATGATGCACTGCAGTCTTTCAC TGGCGATATTAGCAGTAATCAAAAGGTTAAGGATGTTATTGGACCCGATGACTTGTATTCCCCGTCTTTCGATTACTTGGCATCCTGTGCTCTCCTTATA TCAAGAGATCGTCCAGCACTTTGGAAGCATCTATTGTAG
AA sequence Show only first row Show all	>Potri.010G069200.1 pacid=42798673 polypeptide=Potri.010G069200.1.p locus=Potri.010G069200 ID=Potri.010G069200.1.v4.1 annot-version=v4.1 MSASSARRLKGRNGVADPTAASKPTKALTPISIPDKNPNSTIKRSLSGKENPARPNSRAQKSAIRPVPRVDKAAVGDGSEGRMRWSTSSAPRGRSPSPSE FIRVFRDSRVSTGGSDNRVVSRAEKSGLRGLKENGGFSGELKKRNGLCKGNDLKILESKKQLRGLKVLNDNCNKEVILRKSREFDSNLDSKVANGGKFDK VYVDKSGSEVKFDSFKDSSEKSYSKGMVSENLKEKGLSDEGKESNAGVKYPSKLHEKLAFLEGKVKRITSDIKKTKEMLDMNNSDASKVILLNIQDKISG IEKAIGNDAGSSSSKSSGNDSGTIVVVEKNEIEKVENVKSQAKGLNTEELEERLIPHHKLLRNRTSLKAPMASCQSHNVSNADEYGCELKVEEKLSSPIE ENPIALEFLDSLSKEDGKVIVRDAKVDLESFEVQEMGDGSASGNQDSSNMFNPKCEEDLLLTTDETLDEFDDQENRNTFIIGEETEDTCVYQVNEIGTKS STGGWFVSEGESVLTHDDGSCSFYDIANCEEKAEYKPPAGVSPNIWRDCWIIRAPGADGCSGRYVVAASAGNTLDSGFCSWDFYAKDVRAFHIEDGGTTA SRTVLGALPNNTTSRRNALSSILLPETQQWWYKPCGPLMVSTASSQKVVKIHDIRDGEQIMKWEVQKPVLAMDYSSPLQWRNKGKVVVAEAETISVWDVN SLNPQSLLSVSLAGRKISALHVINTDAELGGGVRQRATSAEAEGNDGVFCTPDSINVLDFRNPSGIGLKIPKIGVSVQSVFTRGDSIYIGCANTRLAGKK HPCSQVQHFSLRKQRLVNTYSLPESNAHSHHSAITQVWGNSKLVMGVCGLGLFAFDALKDDALQSFTGDISSNQKVKDVIGPDDLYSPSFDYLASCALLI SRDRPALWKHLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14310			Transducin/WD40 repeat-like su...		Potri.010G069200 [exp]	0	1
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.019G032900 [exp]	6.16	0.7996
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	16.18	0.8449
AT4G28230			unknown protein		Potri.013G147500 [exp]	30.41	0.8191
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	72.24	0.7872
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.004G187900 [exp]	75.57	0.7336
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Potri.013G114700 [exp]	90.11	0.7984
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.009G116700 [exp]	99.17	0.7999
AT5G01420			Glutaredoxin family protein (....		Potri.010G243700 [exp]	101.46	0.7914
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	106.59	0.7413
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.011G156500 [exp]	168.66	0.7792

Compare expression of checked genes

Potri.010G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.