Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33470 332 / 3e-117 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT1G21360 127 / 1e-36 GLTP2 glycolipid transfer protein 2 (.1) AT3G21260 124 / 5e-35 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168800 [exp] 357 / 3e-127 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 288 / 3e-100 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.005G188600 [exp] 150 / 2e-45 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 140 / 2e-41 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021169 [exp] 368 / 2e-131 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10011806 [exp] 359 / 9e-128 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 257 / 3e-87 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 231 / 4e-77 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10018917 [exp] 140 / 3e-41 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 134 / 6e-39 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10029765 [exp] 129 / 1e-37 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10042793 [exp] 126 / 1e-33 AT1G21370 486 / 2e-170 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [poplar] [flax] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Potri.010G069600.3 pacid=42800005 polypeptide=Potri.010G069600.3.p locus=Potri.010G069600 ID=Potri.010G069600.3.v4.1 annot-version=v4.1 ATGGAGGCTTCAGCTGGTCAAGGAACTGTTTTTGCACCATCGTTGGAAGGAATGAAGCATGTCAGATCTGATAACGGAGAAATACTCACTAAACCTTTCT TGGACGTCTGCAAATTGATTTTGCCTGTTATTGATAAGTTTGGAGCTGCTATGGCCCTTGTAAAATCTGATATCGGTGGTAACATAACAAGATTGGAAAC CAAATATCTGTCAGATCCATCTAAATACAACCAATTTTACACTATGGTTCAAGAGGAGGTTGATGCTAAAACAGCAAAAGGATCATCAAGTTGTGCCAAT GGTCTTCTTTGGCTGACCAGAGCAATGGATTTCCTGGTGGAACTTTTCCGGAATTTACTTACACATCCAGATTGGACAATGTCACAAGCCTGTACAGATT CCTATGGCAAGACACTGAAAAAATTTCATGGCTGGCTTGCCAGTTCAAGTTTCACTATTGCCATGAAGCTTGCTCCAGATAGGAAGAAGTTCATGGAAGT AATAGCTGGCACAGGCGATGTTGCTGCTGACATGGAGGAATTTTGTACAACCTTTCCTCCATTTCTTGAAGAGAATCACAAGTTCCTGGCTAGTGTTGGT CTGGATGATATGAAAGCTTCATAA
AA sequence Show only first row Show all	>Potri.010G069600.3 pacid=42800005 polypeptide=Potri.010G069600.3.p locus=Potri.010G069600 ID=Potri.010G069600.3.v4.1 annot-version=v4.1 MEASAGQGTVFAPSLEGMKHVRSDNGEILTKPFLDVCKLILPVIDKFGAAMALVKSDIGGNITRLETKYLSDPSKYNQFYTMVQEEVDAKTAKGSSSCAN GLLWLTRAMDFLVELFRNLLTHPDWTMSQACTDSYGKTLKKFHGWLASSSFTIAMKLAPDRKKFMEVIAGTGDVAADMEEFCTTFPPFLEENHKFLASVG LDDMKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Potri.010G069600 [exp]	0	1
AT1G09150			pseudouridine synthase and arc...		Potri.013G013700 [exp]	2.00	0.9168
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	3.16	0.9031
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007300 [exp]	3.46	0.8989
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	3.60	0.9247	PAG1.2
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Potri.009G004500 [exp]	8.24	0.8804
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	8.48	0.9066
AT5G49540			Rab5-interacting family protei...		Potri.010G148600 [exp]	9.48	0.8938
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	10.39	0.9064	Pt-CHI.3
AT5G59613			unknown protein		Potri.008G053000 [exp]	14.49	0.8841
AT5G53650			unknown protein		Potri.015G006500 [exp]	17.54	0.8887

Compare expression of checked genes

Potri.010G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.