Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 514 / 6e-175 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G38830 508 / 1e-172 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G05200 477 / 2e-160 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G11470 471 / 3e-158 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G23180 466 / 3e-156 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21400 464 / 6e-155 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G00970 461 / 1e-154 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23130 460 / 3e-154 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G21230 459 / 4e-154 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23190 460 / 6e-154 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 561 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029800 [exp] 543 / 0 AT4G23220 568 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029700 [exp] 531 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 531 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029100 [exp] 527 / 4e-180 AT4G23220 570 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G030000 [exp] 527 / 5e-180 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030012 [exp] 525 / 1e-179 AT4G23220 564 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G028400 [exp] 526 / 2e-179 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G029000 [exp] 523 / 2e-178 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 503 / 2e-170 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 483 / 9e-163 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 480 / 3e-161 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 471 / 5e-158 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 437 / 2e-137 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 402 / 2e-131 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 397 / 1e-129 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 395 / 9e-129 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 392 / 6e-128 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 393 / 7e-128 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G069800.1 pacid=42799133 polypeptide=Potri.010G069800.1.p locus=Potri.010G069800 ID=Potri.010G069800.1.v4.1 annot-version=v4.1 ATGGACCGTCCAAGTTTGGTTTCCCTCTTTTCTCGTATTCTCATTACCCTTTGTTTTGGAATTGCACAACCGCAACAATTTTGTTCCAACAAGGGAACCT ATTCTGTAAATAGTACCTACAGCTATAATCTCAATCTACTACTCTCTTCTCTCCCTTCAAGCATAGCAGAGAATGGTATCTTCTACAAAGCCACAGTAGG CCAAGGCCCTGACAAAGTCTATGCTCTGGCCCTTTGTAGAGAAGATCTTCCCTCAGAAAAATGCTACAGTTGCGTTAACACTACTAGCCAAGGCATTAAA CAGCAGTGTCCTAATCAAAAAGAAGCACTCGTGTGGACGGGTTCTAATTGCCTGGTAAGGTATGCGAACCGTGATATTTTCGCCAAGATGGAGGAAATAC CTCCCTTCTGCATATCCAATCCGAATGATTTCTCTGGAGATTTTGCTAAATTCAACGAGACACTACATGATTTGATGGAGAAACTTATAACTCAGGCTTC TTCGGGTCCCAAGTTTGCAACAGGAGATGTGAACTTCACAAAACCGATATATGGTCTGGTGCAATGTACCCCTGATATATCAGAGCGTGATTGCGGAATT TGTCTACAGAAGGGAATGGGAGAAATGGAAAGCTGTGCTGGTGGACGCGAAGGAGGAAGAGTTCTTAGTCCAAGTTGCATAGTTTGGTTTGAGGTATTTC GTTTTTATATCCCTGCTGGTACTGTAGATGCTCCGCTACAATTTCCTCCAGGCGCGGCTATCTTACCTCCTCAGCCACCATCTCCTCCAAGTCCCGCTAA CGTATCCCCTCTCAACGAGACAAGAAACAAGATTGTTATTATCATTGTTGCGGCTGTAGCCAGCTTAGTTACCCTTATCACAATCATTTGTGCTCTTTTC CTATGGAGAAGGATGAAGCAGAAAGTTGAGAATGATGATGAGATGAGAATGCTAGAATCCTTGGAATTCAACTTCAGTACCTTGAAAATAGCAACAGATG AATTCAGCAATGATAATAAGCTTGGACAAGGTGGATTTGGTTCAGTTTACAAGGGAGTGCTTCCAAACGGACAAGAAATTGCTGTCAAAAGGCTATCCGG CTATTCTTCACAAGGTGAAATAGAATTCAAGAATGAGATTCTGTTATTGGCTAAGCTCCAACACAGAAATCTTGTTAGCCTTGTAGGTTTTTGCTCCGAA GGAGAGGAACGAATCCTTGTTTATGAGTTTTTGGGGAATGGCAGCCTTGATAAATTCATATTTGATCCAATCAAGAGCACCCAACTGAATTGGGAAACAA GGTGCAGAATCATCAGCGGCATTGCTAGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTTAGGATCATTCATCGTGACCTGAAAGCTAGCAATGTCTT GTTAGATGAAGAGATGAATCCTAAAGTTTCAGATTTTGGCTTGGCAAGGCTGTTTCAACCAGATCAAACCCAACGCATTACCGGCAGAGTTGCGGGGACC TACGGCTACATGGCTCCAGAATATGCCTTGCACAATCGATTCTCAGTGAAATCTGACGTCTTCAGTTTTGGAGTGTTGGTTCTAGAGATAGTAACTGGTA AGAAAAACAGCTGGCTGAACAATTCGGAGGAACTAGAGCTCCTTCTAATCCATGTATGGAGAAATTGGAGAGAAGGAACAGCTACGAACCTGATTGACGA AACATTGAGGGGCAGTCCAGTAAGTGATGTAATGAGATGCTTACACATAGGTTTATTGTGTGTTCAAGAGAATGTGTCAGGTAGACCCACCATGGCTGCT GTTGTTCCTATGCTCAATAGCCAATCCTGGAGTCTCCCATCACCTTCACGACCTGCGTTTCTTTTGGACAGTAACGCAGACACAGGCTTGCCTTTATTAG AATCCGATACAGGAACTACTACGCAGGACCAATCCACAGAAAACACACAACGGACAGCATATCTGTCTCCAAATTGA
AA sequence Show only first row Show all	>Potri.010G069800.1 pacid=42799133 polypeptide=Potri.010G069800.1.p locus=Potri.010G069800 ID=Potri.010G069800.1.v4.1 annot-version=v4.1 MDRPSLVSLFSRILITLCFGIAQPQQFCSNKGTYSVNSTYSYNLNLLLSSLPSSIAENGIFYKATVGQGPDKVYALALCREDLPSEKCYSCVNTTSQGIK QQCPNQKEALVWTGSNCLVRYANRDIFAKMEEIPPFCISNPNDFSGDFAKFNETLHDLMEKLITQASSGPKFATGDVNFTKPIYGLVQCTPDISERDCGI CLQKGMGEMESCAGGREGGRVLSPSCIVWFEVFRFYIPAGTVDAPLQFPPGAAILPPQPPSPPSPANVSPLNETRNKIVIIIVAAVASLVTLITIICALF LWRRMKQKVENDDEMRMLESLEFNFSTLKIATDEFSNDNKLGQGGFGSVYKGVLPNGQEIAVKRLSGYSSQGEIEFKNEILLLAKLQHRNLVSLVGFCSE GEERILVYEFLGNGSLDKFIFDPIKSTQLNWETRCRIISGIARGILYLHEDSRLRIIHRDLKASNVLLDEEMNPKVSDFGLARLFQPDQTQRITGRVAGT YGYMAPEYALHNRFSVKSDVFSFGVLVLEIVTGKKNSWLNNSEELELLLIHVWRNWREGTATNLIDETLRGSPVSDVMRCLHIGLLCVQENVSGRPTMAA VVPMLNSQSWSLPSPSRPAFLLDSNADTGLPLLESDTGTTTQDQSTENTQRTAYLSPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.010G069800 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	4.89	0.7455
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	8.54	0.7682	WRKY51.1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G099200 [exp]	19.13	0.7235
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	27.23	0.7210
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	36.46	0.6921
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Potri.008G070400 [exp]	39.49	0.6816
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	48.49	0.6631
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.010G036500 [exp]	74.03	0.6907
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	95.40	0.6671
AT3G50520			Phosphoglycerate mutase family...		Potri.007G040700 [exp]	100.99	0.5892

Compare expression of checked genes

Potri.010G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.