Plant FIBer expression Database

Potri.010G070001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23370 268 / 4e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Potri.010G070001.3 pacid=42797641 polypeptide=Potri.010G070001.3.p locus=Potri.010G070001 ID=Potri.010G070001.3.v4.1 annot-version=v4.1
ATGACTCTCTCTCTTTTCCTACTCTCAAAACCAGTCTTGCATTTCCACGCAAGTGGAATCGCGAAATCAACAAGATGGCTCTCTTCTTCTTATTCTTCTT
CAAACGGAGGGACCCAATATTTATCACGCGTGAAGGGAGTGGAGGGGGGCAAGGAGAATGAACACATGGAAATGCATCTGAAAGACTTGCCAAAAGTGAA
AGAAGTTGAAATGAAAGTGGGTGGATCATGGTATTCTCTGAAAAACATCTTTACTAATTTTAAGGACCGAATGTTCAGAAATCCTCAAAGTCACAAGCAA
ATTAGCAGAGATACAACACTTTCTGCAGTTGACTCTGCTGCATCTGAGATTATCGCAACACAAACTGGTGTTAGTAAACATATTGCTGAATCTGGGGGGT
CTGATAATGTACTTAAGTCATCAGAAATCCCAACAGACTCCAACAGCAGAAGAGAGTATTTCAACACATGCAACATCTCATTTACAAGGGAGACACCTCT
CGAAGATGCGGTTAATACAACAGCTTCTGATGCTATGGAGATACATGGATCTCTTGATAATAATAAGCATGATGAGCATGATAGTACTATTGTTCAAGCA
GCAAGTGCCATAATTTCAGATGATCCAAAGGAGGTCATGCTTGAAAATGGGAAGAGGCTGCTTGAGGAGGCGACATTTGGAACAGTTGTTGAATCAAACA
ATAACCAGGAGGAGGAGGCTGGGAACCTAGTTTCTTTGGCAGATCACTTATTTGATAATGCTTTTGATACAAGGCAGAACAAAAGTGCAAAAGAATCAGC
TTCAATTAGAAAGGAAAAATGTCAACTTGAGAAGAAAACAGCCACACTGGTTGAAAGAGTGAACATAGATGGCTCTAAATTGGAGGAAAGACCTCCGTTA
TCTGATGTTTCTCAAGAGGATGATGGATTAGTGAACTTGTTTAAAATGTCAGTGAGTAATAAAACAGCAGCAGAAACGAGTAGAGTAAATGGTGATCTTT
TTACACCGAGTATATCTTTCAGTAATCATGATGGAAAATCACTGAAAAAAGAAGAGAGCCCATTTGATTTCGAAGGATTATATGGCCACATTAAGATGCT
GCGACCGGTTACAGCTCAAGACAACGCCATTCTCAAGTCCAATGCTGAAAGCAGAAAAACTGTTTTGAAAGACCGTGCTGTTAGCAAGAATAATAAGAAG
AGAAGTAAAATAAAGAAAGAGCAGAGTGCTAAAACCATGACAAAAGACGAGGGTGGTAATTTGGATATTGCAGAAAAGGATCACATTAAATTAGAAAAAA
CTCCACAAGCTCCTCTTGAAACTAGCGAAAAAGATTCAAATCAAACTCCTTTAACATCTTTGGCAGACGGAGATACAGAAAACAAATTATTGCTCAGATT
CTTGCACAAAGATGTTGGGGACGGTGATATAATTTCTTGTTTTAGGAATTGCGGGCCTATTTCAAAGATTGAAAAGGTTTCGTCTGTCAAAGGGAGCAAT
TTGTTTGATGCTTTTTTACATTTCGAGACAAGGCAAGGTTTGCATAAAGCTCTCGAGAAGCCCGAGGTCTTGATCAAGAATTCAAACGCCTTCATTCATG
ACACAGCTAGCCGAATTTCTATTCCTAACCTGATTGGTGATATTGACATTTCAGTTGCCCTAGTGAAACATCCCACCCGTACAGTTAAGATAAAGCGGCT
GACTGATGATATTAGCTCACATCAGCTGAAGGAAGCTCTCTCCTTCTGTAGGAGTGGCATAAATGGCTTCTTTTTGGGAGCTTCAAGTTCCAGTGCCTAT
GTGGAGTTTGAGAGTGAAGATGCCAAAGAGAGGGCACTAGCAAAGCATTTCTTACAGGTATCAGGAAAGCAGCTATCAATTTTCAGAGTTGATGCACCAA
GAACAACAGTTGTAAGAATCCTAAATATCAATCCACAATGTCGTTCTAATGTCCTCACGATTTGCAAATCTTTTGGGAAACTCTGGAGGATGAAGCTCAG
ACATGAGAACATTGCGGATGTGTATTTCAAGATTGATGAATGGCCTAACATGTTAAATATTTTGAATAGTTTGAATGGATTGGAAGCGGATGGCAGCCGG
TGGGTTGCTCAGCCTGCTTCCATCTTTCCTCCTATAATTTTGCAAGCCCTCTGGAACCACCCAGATGAAAGAAGACACGTGATTTCATCAATGCAATGCT
TATTGAAGAAACTTGAGCATCCTATGGACACAGCTGAATTAAACAATCTGGCAGCAAGGTTTTGTGGCTATAGCCTATGA
AA sequence
>Potri.010G070001.3 pacid=42797641 polypeptide=Potri.010G070001.3.p locus=Potri.010G070001 ID=Potri.010G070001.3.v4.1 annot-version=v4.1
MTLSLFLLSKPVLHFHASGIAKSTRWLSSSYSSSNGGTQYLSRVKGVEGGKENEHMEMHLKDLPKVKEVEMKVGGSWYSLKNIFTNFKDRMFRNPQSHKQ
ISRDTTLSAVDSAASEIIATQTGVSKHIAESGGSDNVLKSSEIPTDSNSRREYFNTCNISFTRETPLEDAVNTTASDAMEIHGSLDNNKHDEHDSTIVQA
ASAIISDDPKEVMLENGKRLLEEATFGTVVESNNNQEEEAGNLVSLADHLFDNAFDTRQNKSAKESASIRKEKCQLEKKTATLVERVNIDGSKLEERPPL
SDVSQEDDGLVNLFKMSVSNKTAAETSRVNGDLFTPSISFSNHDGKSLKKEESPFDFEGLYGHIKMLRPVTAQDNAILKSNAESRKTVLKDRAVSKNNKK
RSKIKKEQSAKTMTKDEGGNLDIAEKDHIKLEKTPQAPLETSEKDSNQTPLTSLADGDTENKLLLRFLHKDVGDGDIISCFRNCGPISKIEKVSSVKGSN
LFDAFLHFETRQGLHKALEKPEVLIKNSNAFIHDTASRISIPNLIGDIDISVALVKHPTRTVKIKRLTDDISSHQLKEALSFCRSGINGFFLGASSSSAY
VEFESEDAKERALAKHFLQVSGKQLSIFRVDAPRTTVVRILNINPQCRSNVLTICKSFGKLWRMKLRHENIADVYFKIDEWPNMLNILNSLNGLEADGSR
WVAQPASIFPPIILQALWNHPDERRHVISSMQCLLKKLEHPMDTAELNNLAARFCGYSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G23370 RNA-binding (RRM/RBD/RNP motif... Potri.010G070001
[exp]
0 1
AT3G49890 unknown protein Potri.001G172500
[exp]
1.73 0.8951
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.011G120900
[exp]
5.91 0.8761
AT3G55510 RBL REBELOTE, Noc2p family (.1) Potri.008G043400
[exp]
6.24 0.8860
AT4G04670 Met-10+ like family protein / ... Potri.004G015200
[exp]
6.92 0.8821
AT5G09840 Putative endonuclease or glyco... Potri.001G307700
[exp]
8.60 0.8888
AT1G27090 glycine-rich protein (.1) Potri.010G034900
[exp]
9.00 0.8644
AT3G59820 LETM1-like protein (.1.2) Potri.007G142000
[exp]
10.09 0.8128
AT3G12270 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN A... Potri.001G030200
[exp]
12.24 0.8569
AT1G45332 Translation elongation factor ... Potri.001G123600
[exp]
12.96 0.8673
AT4G19650 Mitochondrial transcription te... Potri.012G118200
[exp]
15.42 0.8315

Potri.010G070001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.