Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43310 893 / 0 COP1-interacting protein-related (.1.2.3.4) AT4G27430 254 / 3e-69 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 236 / 1e-64 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT3G14172 150 / 2e-36 unknown protein AT1G72410 129 / 5e-30 COP1-interacting protein-related (.1.2) AT1G17360 125 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168300 [exp] 2035 / 0 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.004G038300 [exp] 255 / 2e-70 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.001G403700 [exp] 257 / 7e-70 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G046900 [exp] 252 / 3e-69 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.011G122900 [exp] 246 / 3e-66 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.001G164900 [exp] 155 / 7e-38 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 152 / 6e-37 AT3G14172 544 / 3e-170 unknown protein Potri.013G091900 [exp] 82 / 2e-15 AT3G14172 122 / 7e-28 unknown protein Potri.019G064000 [exp] 81 / 7e-15 AT3G14172 99 / 8e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011809 [exp] 1128 / 0 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10021172 [exp] 1108 / 0 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10043092 [exp] 248 / 1e-67 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10032660 [exp] 246 / 2e-66 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018471 [exp] 229 / 2e-62 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10011217 [exp] 223 / 2e-60 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10013178 [exp] 162 / 8e-40 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 157 / 2e-38 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 114 / 3e-27 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G070200.4 pacid=42797227 polypeptide=Potri.010G070200.4.p locus=Potri.010G070200 ID=Potri.010G070200.4.v4.1 annot-version=v4.1 ATGAAGTCTTCAACTCGGCTTGACTCGGCCATTTTTCAACTCACTCCAACTCGAACCAGGTGTGATTTGATTATATGTGTGAATGGTAAGACAGAGAAAA TAGCTTCAGGGTTGGCACAACCATTTCTTGACCACTTGAAAACTGCTCAAGATCAATTGGCCAAGGGGGGCTACTCAATTATTCTTGAGCCTGGAACTGA TGCAGCATGGTTCACGAAAGGAACAATCGAGAGGTTTGTTCGCTTTGTGAGTACACCAGAGGTCTTGGAACGAGTTTACAATTTAGAATCTGAGATCTTG CAGATCGAAAAGGGAATTGCAATTCAAAGCAACAATGATATAGGATTGAGCTCGGTAGAAGATAATCGAGCAAAACCTGCAGAGTGCATTGAAGGTAGCA GGCCTCCAACAGATTCTAGTGAGGAAAAAGCCATTGTCCTTTACAAGCCTGGTTCACATCCACCAGAAGCAAATGGGTCGACTGTGCAGGAAGGAAATTC CAAGGTTCAGCTTCTGAAAGTTCTGGAGACACGAAAAACTTCACTGCAGAAAGAGCAGGGCATGGCCTTTGCACGTGCTGTAGCTGCTGGTTTTGACATT GATCACATGGCACATTTAATGTCATTTGCTGAAAGTTTTGGAGCCTTACGCTTGATGGATGCTTGTGTAAGATTTATGGAATTATGGAAAAGAAAACATG AAACTGGCCAGTGGGTTGAAATTGAAGCAGCTGAAGCAATGTCTAGCAGGACAGATTTTTCAGCCATGAATGCGTCAGGCATCGATCTCTCTAATACAAT CAACAAGCAGTGGCCCGAAACTCCTGATAGTAACAGGAAAGCAGGTGTTGACCCAAATGCAGATGAGAGGCCTCCAACGGATCAACAACCATCACCAGGC CAACAGGAATATTTTCAAGCCCAGTTTCCGCATCCTATGTTCCCTCCCTGGCCCATTCATTCGCCACCTGGAGCAGTGCCTGTCTTTCCAGGGTATCCAA TGCAAGGCATTGCTTACTACCAGAATTATCCGGGAAATAACCCAGTTTTTCAGCCACCATATCCATCAGGCGAGGATCCTAGAATCCATGCTGGTCAAAG GATGAGGCAAAGAAGGCATTCTATGGATAGCAACACTGAAACTGAGGCTTGGGAAGTGGATGCTTTGAGAACAGGATCTCAGGATGAGGCAGAATTGGAG AAGGAAACTTCGAGAGGTCGAGGACGAGGGAGGAAGGGAAGTCATTCAGGTAAAAAAAAATCAGGCACGGTTGTTATTCGGAACATCAACTACATCACTT CAAAGAGGCAGGACTCATCTGTTAGTGAATCACGATCAGCTTCTGGTTCTGAAAATGACGAGGAAGATGAAATTTTATCAGACACAGCTCCGAATGTGAA GCACAGGAACTCTCTGAGATCCTCAAAAAGGAAGGGAAGCCATACAAAATCTACAGATGAACTGAAATTATCAGATATGGCTGGAACATCTTACGGGAAG GAGGAGGAAGGTGGACACTGGAAAGCATTTCAAAATTATTTGCTGAAAGATGCTGATGAAGCTGAACGTGTTGTTGACCAAGGTATGTTTGCAATGGAAA AGAATGTTCGAGCAAAAAGGCGACAAAATACAATGGGTGATGATCCTTTAGTTTTTGATGGACGAGATCCAGTTGATAATCAAGAAGGGGATGTGACAGT TATGCAGAAAATTAGTGGAAACTTGACCCGCATGACTAAGGCATCAAAAGATGAATTGTTGCTATCCATAAAAATGGGTCAGCCTAATGATGATAGAAGG TTGATAAATGGTCAAATGGATCTACAGTCTGCAGAAATAGATGGGAGGAGAGGTCAATATAGGATGAATGCAAATGATGATTTTATAATTCATGGACGAG AAAACAAGTCAGGTTATAGAAGTTTAGCATCAGATCCTCTGGCTGTTAATGGATTTGAGACTGCAAAAAATGATCTAGACAGGAGGTCATCCGTCAACAT GGATGATGATTCATACATAGTCTCACTAAGGTCAACTTCACTAGATCAAGCTGGAACTGAGGGGAGAAACACAATCGACATGGACTCTGAGTTCCCATCA ACAGTTCAGAGGACAGAGAGCTTATCTAACAGGAGCCAAGTCAAATATGAACCGGATGATTTAAGTTTGATGCCTGAGCGTGGGACAGAAAAGGGGTCTA TTGGTTATGATCCTGCTTTAGATTATGATATGCAGGCTTCGCTACATAAGAAAAATAATGAGGCTGTAGCTGGTCAAGGCTCTAAGAAGTCAGACAAGGA CCGGAAATCAAAACTCATTCCAGATACTTCAGATAGGAAGAAGCCAGCAGGACCGATAAGGAAAGGAAAGCCTTCGAAGTTGAGTCCTTTGGATGAAGCA AAGGCACGTGCTGAGAGGCTAAGAACATTTAAAGCTGATCTCCAGAAAATGAAGAAAGAGAAGGAAGAAGAAGAGATTAAACGACTGGAAGCTTTGAAGT TAGAGAGACAAAAGAGGATTGCTGCCAGAGGCAGTTCCACTACTGCTCAGTCAGCATCACAGCGAACCAGTAAACAATTGCCAATAAAGCTTTCGCCAGG CTCTCAAAGAGGATCAAAATTCAGTGATTCAGAGCCGGGATCCTCATCACCTCTACAAAGGTTCTCCATCAAAACTGTTTCTGCAGGATCGGGTGATTCT CAGAAAGTCTCAAGGTCCAGCAAATTGAGCACTGGAACAACTAGCACAGTTGGAAATAGGTTAACTCAGTCAGTATCATCATTGTCTGAACCAAAGAAAG ACAACAGTGGTGTGACACCTGATTCAAAGGCATCCGTGGCCAGGATTAGGAGGTTATCAGAGCCAAAAATAAGTAGCCGCGATCATACTTCTTCAACTAA ACCACGAAACAGTGAATCAGTATCAAAGCCAAAATTATCCAGTGGGGCTGACAGCAAGAAAATATCTGCACTGATGAACCATGATAAAAGCAAGGTGGCA TCTCTTCCAGAACTGAAAACTAAAACCACTAAAGGACATGATGTTGTGCCTGGCAATTCAGCAGCAAAAGAAATTCCACAGAAGATGAACAAAAGTAAGT CTATTTCAACTTCTAAAAGCACTGAATTGAAACAGAATGGCAACAAAATTTCACATCATAGTGATGGGGATGACAACCCAATAATTGAGAAAACTGTTGT GCTTGAGTGTGAGAAGCCCACCATTCCCTCTGTACACGCATCAGAACAGAATATAGAAGTACAAGATGGACACTCTAATAACTATAAAATACCGGAGAAA ACAGAGACTGTGGTGGATTATGCTAATTTTCAAGCGCCAGTTTCACCATTTACCATGGATGGGATTGATAGAAACCACACTGAGCATCAATTACCAAAGC ACCCCGGGGTTCATGAGGCTGCATCTGAGCATGCAAGTCATGCAGAGAAAGAATTACCAAAGCTTTCAAGCACTCATATTGCTGAGAAGCCCTACCATGC CCCTTATGCTCGGGTCTCTTTTATGGAAGATCCTTGTACTGAAAATTCTGAACATGGCAAAGCAACTCCAACAAGCTTACAGACACATTCAGCAGGTGCA GAGACCATTAAAGCTCATGTATCTGATTTAAAAAGCTTGAAACTAGAACAGATCCCTGAAGTATTGGAGAAGCCTCAGACAAAGGAATCATCTAAAGGGT TTAGACGATTGCTGAAGTTTGGAAGAAAGAGCCAAACTGCAGGTGAACGTAATGTAGAATTGGATAATGTTAGTTTGAATGGTTCCGAGATGGATGACAA CGCTGCTTTTTCTAGTGAAGTTCATACATTGAAGAATCTAATCTCTCAAGATGAGACCCCTACTGCTGGCCCCAATCAAAAGACTTCTCGCCATTTCTCA TTGTTATCGCCCTTCCGAAGCAAGTCAGGTGAAAAGAAGATGACTACTTGA
AA sequence Show only first row Show all	>Potri.010G070200.4 pacid=42797227 polypeptide=Potri.010G070200.4.p locus=Potri.010G070200 ID=Potri.010G070200.4.v4.1 annot-version=v4.1 MKSSTRLDSAIFQLTPTRTRCDLIICVNGKTEKIASGLAQPFLDHLKTAQDQLAKGGYSIILEPGTDAAWFTKGTIERFVRFVSTPEVLERVYNLESEIL QIEKGIAIQSNNDIGLSSVEDNRAKPAECIEGSRPPTDSSEEKAIVLYKPGSHPPEANGSTVQEGNSKVQLLKVLETRKTSLQKEQGMAFARAVAAGFDI DHMAHLMSFAESFGALRLMDACVRFMELWKRKHETGQWVEIEAAEAMSSRTDFSAMNASGIDLSNTINKQWPETPDSNRKAGVDPNADERPPTDQQPSPG QQEYFQAQFPHPMFPPWPIHSPPGAVPVFPGYPMQGIAYYQNYPGNNPVFQPPYPSGEDPRIHAGQRMRQRRHSMDSNTETEAWEVDALRTGSQDEAELE KETSRGRGRGRKGSHSGKKKSGTVVIRNINYITSKRQDSSVSESRSASGSENDEEDEILSDTAPNVKHRNSLRSSKRKGSHTKSTDELKLSDMAGTSYGK EEEGGHWKAFQNYLLKDADEAERVVDQGMFAMEKNVRAKRRQNTMGDDPLVFDGRDPVDNQEGDVTVMQKISGNLTRMTKASKDELLLSIKMGQPNDDRR LINGQMDLQSAEIDGRRGQYRMNANDDFIIHGRENKSGYRSLASDPLAVNGFETAKNDLDRRSSVNMDDDSYIVSLRSTSLDQAGTEGRNTIDMDSEFPS TVQRTESLSNRSQVKYEPDDLSLMPERGTEKGSIGYDPALDYDMQASLHKKNNEAVAGQGSKKSDKDRKSKLIPDTSDRKKPAGPIRKGKPSKLSPLDEA KARAERLRTFKADLQKMKKEKEEEEIKRLEALKLERQKRIAARGSSTTAQSASQRTSKQLPIKLSPGSQRGSKFSDSEPGSSSPLQRFSIKTVSAGSGDS QKVSRSSKLSTGTTSTVGNRLTQSVSSLSEPKKDNSGVTPDSKASVARIRRLSEPKISSRDHTSSTKPRNSESVSKPKLSSGADSKKISALMNHDKSKVA SLPELKTKTTKGHDVVPGNSAAKEIPQKMNKSKSISTSKSTELKQNGNKISHHSDGDDNPIIEKTVVLECEKPTIPSVHASEQNIEVQDGHSNNYKIPEK TETVVDYANFQAPVSPFTMDGIDRNHTEHQLPKHPGVHEAASEHASHAEKELPKLSSTHIAEKPYHAPYARVSFMEDPCTENSEHGKATPTSLQTHSAGA ETIKAHVSDLKSLKLEQIPEVLEKPQTKESSKGFRRLLKFGRKSQTAGERNVELDNVSLNGSEMDDNAAFSSEVHTLKNLISQDETPTAGPNQKTSRHFS LLSPFRSKSGEKKMTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	0	1
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.012G092400 [exp]	5.65	0.7206
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	8.06	0.7548
AT1G28050	CO	COL15	B-box type zinc finger protein...		Potri.003G166000 [exp]	11.66	0.6420
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	14.17	0.7185
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	16.24	0.6429
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.001G460600 [exp]	18.16	0.6926	Pt-WRKY14.2
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	24.81	0.6978
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	25.61	0.7131
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.016G003800 [exp]	30.85	0.6653
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.001G066800 [exp]	31.62	0.6599

Compare expression of checked genes

Potri.010G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.