Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23340 681 / 0 CKL10 casein kinase I-like 10 (.1) AT4G14340 677 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT5G43320 661 / 0 CKL8 casein kinase I-like 8 (.1) AT4G28540 644 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G04440 637 / 0 CKL13 casein kinase like 13 (.1) AT5G44100 635 / 0 CKL7 casein kinase I-like 7 (.1) AT1G03930 632 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G26100 541 / 0 CKL1, CK1 casein kinase 1 (.1) AT1G72710 539 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT5G57015 530 / 0 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168100 [exp] 794 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.005G226900 [exp] 697 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 689 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.013G047200 [exp] 660 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.003G043500 [exp] 548 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 546 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 542 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 539 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 498 / 3e-175 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021175 [exp] 757 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 755 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10024916 [exp] 664 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 659 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10042570 [exp] 657 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 656 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10022908 [exp] 634 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10014661 [exp] 618 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 612 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1) Lus10003539 [exp] 552 / 0 AT4G28540 555 / 0.0 casein kinase I-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G070400.1 pacid=42799282 polypeptide=Potri.010G070400.1.p locus=Potri.010G070400 ID=Potri.010G070400.1.v4.1 annot-version=v4.1 ATGGATCATGTGATTGGTGGCAAGTTTAGGCTTGGCCGGAAGATCGGTAGTGGATCCTTTGGTGAACTTTATTTAGGTATTAATGTACAGAGTGGAGAGG AAGTGGCTGTTAAGTTGGAATCTGTGAAAACCAAGCACCCTCAGCTTCATTATGAATCAAAACTATACATGCTACTTCAAGGAGGAACTGGTATTCCTCA TCTCAAATGGTTTGGAGTTGAGGGTGAATACAATGTCATGGTTATTGACCTTCTTGGACCAAGCCTCGAAGACTTGTTTAATTATTGCAATCGAAAGTTA TCTTTGAAAACGGTGCTGATGCTTGCAGATCAATTAATAAATAGAGTTGAATACATGCACTCAAGGGGTTTTCTTCACCGTGACATCAAGCCTGACAACT TTTTGATGGGTTTAGGGCGCAAAGCAAATCAGATCTACATCATTGACTATGGCCTTGGAAAAAAGTATAGGGATCTGCAAACACACAAGCATATACCATA TAGGGAAAACAAGAATCTCACAGGCACGGCTCGCTATGCTAGTGTTAATACCCATCTTGGAGTTGAGCAAAGCAGAAGAGATGATCTGGAATCTCTTGGT TACGTGCTTATGTATTTTTTGAGGGGAAGCCTTCCATGGCAGGGCTTGAAAGCTGGCACTAAAAAACAGAAATATGACAGGATCAGTGAAAAGAAGATGC TTACTCCCATAGAGGTCCTTTGCAAAAACTATCCTTCAGAATTTACATCTTACTTTCATTATTGCCGTTCACTGCGATTCGAAGACAAACCAGATTATTC ATACCTGAAGAGACTATTCCGTGACTTGTTTATTCGAGAAGGCTATCAGTTTGATTATGTATTTGACTGGACTATATTGAAGTACCCGCAGATTGGCTCC AGTTCTAGATCACGACTAAGTGGAAAACCAGCTGTAAACCCAGGACCATCCGCAGAAAGAGTAGAATGGCCTTCAGTAGGCCAGGAAATCCGGGACAGAT TCTCTGGTGCAGTTGAAGCATTTGCTCGAAAGAATAGCACTGGACATGCTATGCACAGAGATCGGTCCAGGCACAGGTCCTCAGATGATGTGCCATCATC AAAGGATGTGCATCCTGATTCAGAAAGGCCCCGGTCATCTTCTCGAAATGGCAGCACTTCAAAGAGGGCTGTAATTTCAAGCAGCCGGCCAAGCTCTTCT GGTGAGCCTAGTGAGAATCGGTCAAGCCGGCTGGCCTCGAGCAGTGGTCGCCTGTCAACAACCCAGAGGATTCAACCTGGGCTTGAGTCAAAATCATCTT CCTTTACTCGTGCTCTAGCCACAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCTATTGGAAGAGGAAAGAGGAAATAA
AA sequence Show only first row Show all	>Potri.010G070400.1 pacid=42799282 polypeptide=Potri.010G070400.1.p locus=Potri.010G070400 ID=Potri.010G070400.1.v4.1 annot-version=v4.1 MDHVIGGKFRLGRKIGSGSFGELYLGINVQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKL SLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQIYIIDYGLGKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPIEVLCKNYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGS SSRSRLSGKPAVNPGPSAERVEWPSVGQEIRDRFSGAVEAFARKNSTGHAMHRDRSRHRSSDDVPSSKDVHPDSERPRSSSRNGSTSKRAVISSSRPSSS GEPSENRSSRLASSSGRLSTTQRIQPGLESKSSSFTRALATRGGRDDTLRSFELLSIGRGKRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.010G070400 [exp]	0	1
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	4.35	0.7548
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	10.29	0.7415
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	12.72	0.7224	UBP25.1
AT1G25570			Di-glucose binding protein wit...		Potri.010G129300 [exp]	14.00	0.6877
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.001G292700 [exp]	25.21	0.6285
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	26.58	0.7201
AT4G33640			unknown protein		Potri.017G042432 [exp]	32.49	0.6802
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.010G090400 [exp]	33.54	0.7019
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.017G065900 [exp]	34.75	0.7035
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.003G197900 [exp]	37.14	0.5995

Compare expression of checked genes

Potri.010G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.