Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 502 / 2e-176 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 322 / 1e-106 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT4G35450 69 / 1e-12 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 66 / 2e-11 AKR2B ankyrin repeat-containing 2B (.1) AT4G27780 54 / 9e-08 ACBP2 acyl-CoA binding protein 2 (.1) AT5G19080 53 / 3e-07 RING/U-box superfamily protein (.1) AT2G38195 51 / 7e-07 RING/U-box superfamily protein (.1.2) AT3G06140 51 / 1e-06 RING/U-box superfamily protein (.1) AT1G63900 50 / 2e-06 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT5G04460 50 / 3e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070750 [exp] 824 / 0 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G167600 [exp] 716 / 0 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 453 / 2e-156 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 110 / 2e-27 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.004G210000 [exp] 61 / 5e-10 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 61 / 6e-10 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.010G185200 [exp] 61 / 1e-09 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 54 / 2e-07 AT5G14230 975 / 0.0 unknown protein Potri.009G070700 [exp] 50 / 5e-07 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009035 [exp] 519 / 0 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 490 / 4e-171 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033896 [exp] 311 / 1e-101 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033895 [exp] 145 / 5e-37 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003551 [exp] 104 / 1e-25 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10020272 [exp] 64 / 2e-10 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10013859 [exp] 63 / 2e-10 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 62 / 8e-10 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10002621 [exp] 59 / 6e-09 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10017455 [exp] 54 / 2e-07 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.010G070800.7 pacid=42797381 polypeptide=Potri.010G070800.7.p locus=Potri.010G070800 ID=Potri.010G070800.7.v4.1 annot-version=v4.1 ATGGGGCAACAGCAATCAAAGCACGAGTTGCTGTATCAGCAAGTGAAAAACGGCAACATAGAAGGAATCAAAAAACTTTGCAGAGAAGGCGCTCGCCTCG AGTGGATTGATAAAGAAGGAAAAACACCACTGATATTGGCGTGTTTGGATCCTCAACTCTTTAACGTGGCTAAAACTTTGATTGAGCTCGGTGCTGATGT TAATGCCTATCGCCCAGGTCGAAAGGGGGGGAATCCCTTGCATCATGCGGCAAAAAAAGGTCTTGAAAATACTGTCAAGTTACTTCTTTCACATGGAGCA AATGCATTAATGACGAATGATGATTGTCAAACTCCTCTAGAAGTTGCTAGGGCAAAAGGGTACGGCAATGTTGTCCGGGCAATTGAGAGTCATATTTGCC TATTCTCTGGTTGGTTGCGGGAGTTTTATGGACCTGGATTTCTAGAAGTATTGGCACCTCGGTTGGTTTCAAGAAACATATGGGCTGTTGTTTTACCTAT TGGTTCCCGTAATCCTGGAATGCCTTGCAAGTTCGAACTTGCCATTTATTCTAGTTTGAAGGATGTTAAACCACGCACGATAATTGCATTGTGGAAAGCA AATCTGGAAGAACCGAAGTTTCACCGCTCCGATCCTACTGTGATGATTGCTGACAACTCCACTAAAACACGCATTAAACTCGCTCCTGCAAATGAAAGAG ACAAGCAACAGCTTCAGTGGTTTTGTGATGCATGCAAAGGAATACCACAGGTAATGCATCCTCTAGAATTTCTGTCCAGATCTCAGAATCTGGTTGTTCA AGCAACTGCTCCACCATCGGATGAAGATCCAGAGATAGCAATGGCAGTAAATGCCTCCATTCAGTCTGCCATGGCAGAGCAACCTATTTTTGATACCCAC TCTAGCACTGGAGCAAGTTCATCCTCTAGCTGGAATTGCCCTGTTAATGATGGCGGTCAAGGTGCTATGGATGTGCCAGCAACACCTCCTCCAAAAACAA CTAGCAGCGGATGGGCACCTTATGAAAGTGTATCTAGTGGCAGCTCAACTCAGCAAACCAAGATCTTGAATAGCAGCGTTGCTGATGTCCAGATAGCAAC TGATGCCCAAGATTCAGTCCCATCAGCTCCACCCATTGTAGATGAGCTTATAGACGATTGTCTCATTCACTATCCATCAATTGATTCCAGCCCCCTTGAT TTTTCTTCCCTGCCCCTTGAGAATTTACCAGAAAACACAGGTGAAAAGAAAGAAGATGGAGGTTCATCATCATGTGTAATATGTTTAGATGCTCTAGTTG AGGGAGCTTGCATTCCATGTGGCCACATGGTTGGATGTATGTCTTGTTTGAAGGAAATCAAAGCCAAGGAATGGGGTTGCCCTGTGTGTCGTGCCACAAT TAACCAGGTTGTAAGGCTCTATGCTGTTTGA
AA sequence Show only first row Show all	>Potri.010G070800.7 pacid=42797381 polypeptide=Potri.010G070800.7.p locus=Potri.010G070800 ID=Potri.010G070800.7.v4.1 annot-version=v4.1 MGQQQSKHELLYQQVKNGNIEGIKKLCREGARLEWIDKEGKTPLILACLDPQLFNVAKTLIELGADVNAYRPGRKGGNPLHHAAKKGLENTVKLLLSHGA NALMTNDDCQTPLEVARAKGYGNVVRAIESHICLFSGWLREFYGPGFLEVLAPRLVSRNIWAVVLPIGSRNPGMPCKFELAIYSSLKDVKPRTIIALWKA NLEEPKFHRSDPTVMIADNSTKTRIKLAPANERDKQQLQWFCDACKGIPQVMHPLEFLSRSQNLVVQATAPPSDEDPEIAMAVNASIQSAMAEQPIFDTH SSTGASSSSSWNCPVNDGGQGAMDVPATPPPKTTSSGWAPYESVSSGSSTQQTKILNSSVADVQIATDAQDSVPSAPPIVDELIDDCLIHYPSIDSSPLD FSSLPLENLPENTGEKKEDGGSSSCVICLDALVEGACIPCGHMVGCMSCLKEIKAKEWGCPVCRATINQVVRLYAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	0	1
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	2.44	0.8104
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.001G136100 [exp]	3.16	0.8086	XTR4.2
AT3G19240			Vacuolar import/degradation, V...		Potri.004G141300 [exp]	5.83	0.7545
AT2G25800			Protein of unknown function (D...		Potri.018G044200 [exp]	10.09	0.8066
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.010G069100 [exp]	10.39	0.7993
AT4G37970		ATCAD6	cinnamyl alcohol dehydrogenase...		Potri.016G078300 [exp]	17.54	0.7575	SAD
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	28.49	0.8056
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.014G082400 [exp]	30.14	0.7221
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Potri.011G141200 [exp]	33.46	0.7935
AT2G35658			unknown protein		Potri.003G081900 [exp]	52.53	0.7840

Compare expression of checked genes

Potri.010G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.