Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MYB172
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 61 / 3e-11 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 52 / 6e-08 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G47460 49 / 1e-06 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT5G49330 48 / 2e-06 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT4G37780 47 / 5e-06 MYB ATMYB87 myb domain protein 87 (.1) AT4G21440 47 / 6e-06 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G22680 46 / 8e-06 MYB ATMYB85 myb domain protein 85 (.1) AT5G62470 46 / 1e-05 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT3G62610 45 / 1e-05 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT1G08810 45 / 1e-05 MYB ATMYB60 myb domain protein 60 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G166700 [exp] 263 / 7e-89 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.005G224100 [exp] 72 / 7e-15 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 71 / 1e-14 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G018200 [exp] 52 / 4e-08 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 49 / 6e-07 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.011G125900 [exp] 46 / 6e-06 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G149200 [exp] 46 / 7e-06 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.001G408700 [exp] 46 / 7e-06 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 46 / 1e-05 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021185 [exp] 73 / 2e-15 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 71 / 2e-14 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10041145 [exp] 53 / 4e-08 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10003557 [exp] 53 / 4e-08 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10042561 [exp] 52 / 4e-08 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10021871 [exp] 52 / 6e-08 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10033889 [exp] 52 / 1e-07 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10022021 [exp] 50 / 2e-07 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10018525 [exp] 49 / 5e-07 AT4G21440 218 / 1e-69 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10030442 [exp] 46 / 7e-07 AT3G01140 170 / 5e-54 NOECK, myb domain protein 106 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G071100.1 pacid=42796932 polypeptide=Potri.010G071100.1.p locus=Potri.010G071100 ID=Potri.010G071100.1.v4.1 annot-version=v4.1 ATGGTGAGGGCTCCTTACTGTGAGAAAATGGGGTTGACGAAGCGGCAATGGACACTTGAAGAAGATCAGATTTTGATCTCCTACATTCAAAACTATGGCA CTGCCCGATTGATCCATTTCTACTCCAGCAATTGCATCAAGATTACCGGGGGACGACAGACAATGAGATCAAGAATGTATGGCACACTCGATCACTTGAA GAAAAGACTCGTACAAAACGGGGAGTCCAAGCCGCAACAATACATCAGAATACCAAACTCTCATGCCAATGACACCAAGCTATCAGAATCGGCAAATTCG ACTATTCCTTCCCTTTCAGGATCTGAAAGTATAGGGTATGCTCAAATGTCCCCTCAACCCTCTTCCATTGATCACTCCTCAGTCATGAGGAACACTTCAA TCACCACTGCAGAAACAAACAGCACCAGCACTAGCATGATCAAAGTTGAAAACATGGACTCATCCGAGATTTATCCAGTGATTGATGAAAATTCTTGGTC AGAACCACAAGTGTTTGAGAATTCCAGCATGCCATCAAATTTTCTAGACGACTTACAATTTCCATTCCCTTCAGCAGACACAATGGAACCAGCAGGGTGC TATGGTTACGTTCCAGATATTGATGACGACATGAAATTTTGGCACCACCTTTTCGCTAAATCTCAGGGAATAAAATAA
AA sequence Show only first row Show all	>Potri.010G071100.1 pacid=42796932 polypeptide=Potri.010G071100.1.p locus=Potri.010G071100 ID=Potri.010G071100.1.v4.1 annot-version=v4.1 MVRAPYCEKMGLTKRQWTLEEDQILISYIQNYGTARLIHFYSSNCIKITGGRQTMRSRMYGTLDHLKKRLVQNGESKPQQYIRIPNSHANDTKLSESANS TIPSLSGSESIGYAQMSPQPSSIDHSSVMRNTSITTAETNSTSTSMIKVENMDSSEIYPVIDENSWSEPQVFENSSMPSNFLDDLQFPFPSADTMEPAGC YGYVPDIDDDMKFWHHLFAKSQGIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.010G071100 [exp]	0	1	MYB172
					Potri.015G106750 [exp]	8.94	0.6557
					Potri.001G276104 [exp]	12.40	0.5963
AT5G12000			Protein kinase protein with ad...		Potri.018G061600 [exp]	20.14	0.5123
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.008G049801 [exp]	24.79	0.4930
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172750 [exp]	68.41	0.4237
					Potri.015G021450 [exp]	70.14	0.4353
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011100 [exp]	95.72	0.4093
					Potri.004G208200 [exp]	102.74	0.3921
					Potri.008G036350 [exp]	127.37	0.4265
					Potri.015G014150 [exp]	128.45	0.3867

Compare expression of checked genes

Potri.010G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.