Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08650 298 / 1e-101 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G04530 278 / 5e-94 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G50700 220 / 2e-68 CPK33 calcium-dependent protein kinase 33 (.1) AT1G76040 218 / 2e-67 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G20410 215 / 3e-66 CPK9 calmodulin-domain protein kinase 9 (.1) AT3G10660 216 / 1e-65 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT1G12680 210 / 4e-65 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G61950 212 / 5e-65 CPK19 calcium-dependent protein kinase 19 (.1) AT4G04720 211 / 6e-65 CPK21 calcium-dependent protein kinase 21 (.1) AT5G04870 213 / 1e-64 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G166500 [exp] 482 / 2e-174 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.019G018100 [exp] 326 / 1e-112 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.013G046100 [exp] 320 / 1e-110 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.003G120800 [exp] 216 / 6e-67 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.012G134600 [exp] 215 / 3e-66 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.006G199400 [exp] 215 / 9e-66 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G200600 [exp] 214 / 3e-65 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G015500 [exp] 211 / 7e-65 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.010G244800 [exp] 212 / 1e-64 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042560 [exp] 311 / 5e-107 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10014657 [exp] 305 / 3e-104 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10021190 [exp] 288 / 1e-98 AT3G04530 186 / 1e-58 phosphoenolpyruvate carboxylase kinase 2 (.1) Lus10011824 [exp] 270 / 5e-92 AT1G08650 227 / 3e-75 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10008958 [exp] 216 / 6e-67 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021248 [exp] 219 / 8e-67 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10013603 [exp] 219 / 1e-66 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10020046 [exp] 216 / 1e-66 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10006777 [exp] 216 / 2e-66 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10015009 [exp] 215 / 2e-66 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.010G071400.1 pacid=42797500 polypeptide=Potri.010G071400.1.p locus=Potri.010G071400 ID=Potri.010G071400.1.v4.1 annot-version=v4.1 ATGAGCGAAGCACTCGACAGAGACTACCAAATCTGCGAGGAGATCGGCCGTGGACGATTCGGTACTGTTTTCCGATGCATCTCCCGCTCCAGCGGAGACT ATTTCGCTGTCAAATCCATCGTCAAGAGCCTCGTCTCCGGTGACTCCCTTGACTCGCAATGCCTCTTAACAGAACCCAAGACCCTCCACTTTCTTTCTCC TCACCCCCACATAATCCAACTCCACAACCTCTACGAGGACGAAACTCACCTTCATATGGTAATCGACTTATGCTCTAATCAAGACCTCCACGATTTGATA ATCACCAATGGCGTTCTTTCAGAGAACGAAGCCAGAGTGGTTTTTACTCAACTGATGAAAGCCATCTCTCACTGTCATACGTACGGCATCGTTCATCGAG ACATCAAGCCTGACAACATCTTATTTGACGAGGAGAATACAATTAAGGTGGCGGACTTTGGATCTGCCGAGGTTGTAATGGAAGGGGAGATGGTGAGTGG TGTAGTGGGGACACCGTATTACGTGGCCCCTGAGGTTTTGTTGGGGAGAGAGTATGGAAAGAAGGTGGATGTGTGGAGTGCTGGGGTGGTGTTGTACATA ATGTTAGCTGGATTTCCGCCGTTTTACGGGGAAACAGCGGATAAGATTTTTGAGGCGGTTTTGAGGGGGAATTTGAGGTTTCCTGCTAGAGTTTTCCAGT CTGTGTCAGCAAGTGTTAAGGATCTTTTAAGGAGGATACTTTGTAAAGATGTTTCCAGGCGATTTTCTGCTGAACAAGTGCTAAGACATCCATGGGTAGC GAATGTGGCTGATTTGACATGA
AA sequence Show only first row Show all	>Potri.010G071400.1 pacid=42797500 polypeptide=Potri.010G071400.1.p locus=Potri.010G071400 ID=Potri.010G071400.1.v4.1 annot-version=v4.1 MSEALDRDYQICEEIGRGRFGTVFRCISRSSGDYFAVKSIVKSLVSGDSLDSQCLLTEPKTLHFLSPHPHIIQLHNLYEDETHLHMVIDLCSNQDLHDLI ITNGVLSENEARVVFTQLMKAISHCHTYGIVHRDIKPDNILFDEENTIKVADFGSAEVVMEGEMVSGVVGTPYYVAPEVLLGREYGKKVDVWSAGVVLYI MLAGFPPFYGETADKIFEAVLRGNLRFPARVFQSVSASVKDLLRRILCKDVSRRFSAEQVLRHPWVANVADLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.010G071400 [exp]	0	1
					Potri.012G007445 [exp]	3.31	0.9898
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107300 [exp]	7.48	0.9749
					Potri.014G163733 [exp]	9.59	0.9864
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107600 [exp]	10.95	0.9493
AT1G03180			unknown protein		Potri.005G208700 [exp]	11.40	0.9851
AT5G11390		WIT1	WPP domain-interacting protein...		Potri.004G111350 [exp]	11.74	0.9860
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.008G153500 [exp]	12.16	0.9355
AT3G55870			ADC synthase superfamily prote...		Potri.008G066600 [exp]	13.03	0.9806	Pt-ASA1.1,ASA%2C,pseudogene
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032800 [exp]	13.96	0.9431	GBP.2
					Potri.003G217500 [exp]	14.00	0.9577

Compare expression of checked genes

Potri.010G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.