Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38940 794 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT3G54700 786 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT5G43360 762 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43370 753 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43350 753 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT2G32830 745 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43340 694 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G20860 451 / 3e-154 PHT1;8 phosphate transporter 1;8 (.1) AT1G76430 444 / 1e-151 PHT1;9 phosphate transporter 1;9 (.1) AT4G08878 347 / 2e-117 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223600 [exp] 823 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071600 [exp] 793 / 0 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 785 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 778 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071700 [exp] 772 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.001G318500 [exp] 761 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.005G175500 [exp] 707 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175700 [exp] 678 / 0 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.019G061900 [exp] 593 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014754 [exp] 769 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10011826 [exp] 768 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10033886 [exp] 763 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10003560 [exp] 761 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10021191 [exp] 757 / 0 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10016635 [exp] 755 / 0 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10012860 [exp] 590 / 0 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 588 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10027575 [exp] 573 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10022548 [exp] 521 / 0 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.010G071500.4 pacid=42799081 polypeptide=Potri.010G071500.4.p locus=Potri.010G071500 ID=Potri.010G071500.4.v4.1 annot-version=v4.1 ATGGCAAGGGAACAATTGCAGGTGCTTAATGCACTTGATGTGGCCAAAACACAATGGTACCATTTCACGGCAATAGTGATTGCTGGCATGGGGTTTTTCA CTGATGCATACGATCTTTTTTGCATCTCCCTTGTGACCAAATTGCTGGGTCGGATATATTACTACCAACCAGGTTCTGATACTCCGGGAGCTTTACCTTC AAATGTGTCATCAGCTGTTAATGGTGTTGCATTCTGTGGTACCCTTTCTGGTCAGCTCTTCTTTGGCTGGCTTGGTGACAAAATGGGCAGAAAACGTGTC TATGGTATGACGTTGATGATCATGGTCATTTGCTCCATTGCTTCTGGCCTCTCTTTTGGCAAAAATCCTACCGCTGTTATGTCTACTCTTTGCTTCTTTC GCTTCTGGCTTGGATTTGGCATTGGTGGTGACTACCCACTTTCCGCTACAATCATGTCTGAGTATGCTAATAAAAAGACTCGCGGTGCTTTCATTGCTGC TGTTTTTGCCATGCAAGGTTTTGGAATCTTGGCTGGGGGGATGGTCGCTATTGTAATTTCTGCGGCTTTTAAGGCCCAGTTTCCTGCCCCAGCTTTTGAA GTTGATCCAGCTGGCTCTACTGTGCCTCAAGCTGATTATGCTTGGCGGATTATTGTGATGTTTGGTGCAATTCCAGCTGCTCTTACTTATTACTGGCGAA TGAAGATGCCTGAAACTGCGCGTTACACTGCCTTGGTTGCGAAGAATGCTAAACAGGCTGCGTCTGACATGGCAAAAGTGCTTGAGGTTGAGTTGGAGTC AGAACAAGAGAAAATTGAGAAGATGTCACAGGAAAAGGGCAATGATTTTGGTCTTTTCTCTACACAATTTGCTCGTCGTCATGGACTCCACTTGCTTGGA ACCACTACCACTTGGTTCTTGTTAGACATTGCATTCTACAGCCAGAATCTGTTTCAAAAGGACATTTTCAGTGCTATTGGGTGGATTCCTAAGCCCAAAA CTATGAATGCCCTTGAAGAGGTCTTTAAAATTGCTAGAGCACAGACTTTAATTGCTCTTTGCAGCACGGTTCCGGGTTATTGGTTTACTGTTGCATTTAT TGACAGGATTGGCAGGTTTGCAATTCAATTGATGGGATTCTTCTTCATGACAGTATTCATGTTTGCCTTGGCTATCCCTTACCATCATTGGACTCTGCCG GACCACCGAATTGGCTTCGTTGTGATATATTCACTCACTTTCTTCTTTGCCAATTTTGGTCCCAATGCCACCACATTTGTTGTTCCTGCAGAGATATTCC CAGCGAGATTGAGGTCTACTTGCCATGGTATATCAGCTGCATCTGGCAAAGCAGGGGCAATTGTGGGTGCATTCGGGTTCTTGTATGCTGCAGATGGTAT CGGAGTGAGGAAGACTCTTATAGTTCTGGGTGTAATAAATTTCCTGGGAATGATTTTTACTTTCTTAGTACCTGAATCGAAGGGAAAATCACTCGAGGAA ATGTCTGGTGAAGGTGAGCAAGAAAACGGATCCACGGCTGAGTCTAGGCAAACCGTTCCAGTTTAG
AA sequence Show only first row Show all	>Potri.010G071500.4 pacid=42799081 polypeptide=Potri.010G071500.4.p locus=Potri.010G071500 ID=Potri.010G071500.4.v4.1 annot-version=v4.1 MAREQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYQPGSDTPGALPSNVSSAVNGVAFCGTLSGQLFFGWLGDKMGRKRV YGMTLMIMVICSIASGLSFGKNPTAVMSTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGMVAIVISAAFKAQFPAPAFE VDPAGSTVPQADYAWRIIVMFGAIPAALTYYWRMKMPETARYTALVAKNAKQAASDMAKVLEVELESEQEKIEKMSQEKGNDFGLFSTQFARRHGLHLLG TTTTWFLLDIAFYSQNLFQKDIFSAIGWIPKPKTMNALEEVFKIARAQTLIALCSTVPGYWFTVAFIDRIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP DHRIGFVVIYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAADGIGVRKTLIVLGVINFLGMIFTFLVPESKGKSLEE MSGEGEQENGSTAESRQTVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071500 [exp]	0	1
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Potri.013G156700 [exp]	2.00	0.7435
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	3.00	0.7623
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G148000 [exp]	6.00	0.6992
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Potri.003G121900 [exp]	8.94	0.7327
AT5G58200			Calcineurin-like metallo-phosp...		Potri.006G188200 [exp]	13.67	0.6816
AT1G02305			Cysteine proteinases superfami...		Potri.002G184300 [exp]	22.97	0.6671
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.006G040900 [exp]	24.45	0.6908
AT2G18630			Protein of unknown function (D...		Potri.005G127401 [exp]	28.49	0.6576
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.008G019400 [exp]	34.64	0.6381	VAMP727.1
AT5G02570			Histone superfamily protein (....		Potri.009G028001 [exp]	35.62	0.6408

Compare expression of checked genes

Potri.010G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.