Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38940 763 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT5G43360 753 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT3G54700 753 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT5G43350 749 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43370 747 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT2G32830 745 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43340 634 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G76430 431 / 2e-145 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 418 / 2e-140 PHT1;8 phosphate transporter 1;8 (.1) AT4G08878 307 / 8e-101 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071700 [exp] 945 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 914 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.001G318500 [exp] 767 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.005G223600 [exp] 767 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071500 [exp] 752 / 0 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 744 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175500 [exp] 690 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175700 [exp] 667 / 0 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.019G061900 [exp] 562 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011826 [exp] 806 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 795 / 0 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10016635 [exp] 777 / 0 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10014754 [exp] 749 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10003560 [exp] 720 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 719 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10012860 [exp] 578 / 0 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 570 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10027575 [exp] 541 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10022548 [exp] 530 / 0 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.010G071600.2 pacid=42798759 polypeptide=Potri.010G071600.2.p locus=Potri.010G071600 ID=Potri.010G071600.2.v4.1 annot-version=v4.1 ATGAAAGTTGAAACCTTTATAAATAGCTGGCCACTCTCCACCCCCAACAACAATCCTCTCTCTTTCTCCCCTCTCTCTCTCCCTCTCCAGCTTTATCCAA TCTTCTCTCACTGGTGTAATTCGTTGAAGGAAGCAGTGCAGGAAATTTATTATACAGCTAAGCGGGAAGGATTAGGCATGGCAAGGGAACAATTGGTCGT CCTTAATGCACTCGATCTTGCAAAGACTCAATGGTACCATTTCACAGCAATCGTGATTGCCGGAATGGGATTTTTCACAGATGCCTATGATCTTTTCTGC ATCTCCCTAGTTACCAAATTGCTTGGCCGCATATACTACACCAAGCCAGGTGCACCAAAGCCAGGCACATTACCTCCTAATGTAGCAGCAGCTGTTAATG GTGTCGCCCTTTGTGGCACTTTAGCTGGTCAGCTATTCTTTGGTTGGCTTGGTGACAAAATGGGACGCAAGAAAGTCTATGGGATAACTCTGGTTCTCAT GGTTCTTTGTTCTCTCGCCTCTGGTTTATCCTTTGGAAGCTCTGCTAACGGAACCATAGCCACTCTTTGTTTCTTTAGGTTCTGGCTTGGTTTTGGCATT GGTGGCGATTATCCTTTGTCAGCCACTATCATGTCTGAATATGCAAACAAGAAGACTCGTGGAGCATTTATTGCAGCAGTGTTTGCAATGCAAGGATTTG GGATTTTGGCTGGTGGGATTGTGGCTCTTGTTGTGTCAGCTGCATTTGATCATAGATTCAAGACCCCATCATACCATGAGAATCCGGCAGCCTCACTTGC TCCTCAAGCTGACTATATTTGGCGTATAATCTTGATGTTTGGTGCTGTCCCTGCTGGGCTTACATTCTATTGGCGTATGAAAATGCCTGAAACCGCACGT TACACTGCACTCGTTGCCAAAAACGCAAAACAAGCAGCGTCAGATATGTCTAAGGTGTTGAACGTGGAATTTGAAGTAGAGGAAGAGAAGATACAGAGGA TAGCCCAAGAACCTGCCAATTCCTTTGGCTTGTTCTCGAAGGAATTTGCCAAGCGACATGGTCTTCATTTGCTAGGAACCACTTCCACATGGTTCTTGTT GGACATTGCATTCTACAGCCAAAATCTTTTCCAGAAGGATATCTTCTCTGCAATCAATTGGATTCCTCCAGCAGCAACCATGAATGCGATTGACGAGGTC TTTCGAATTGCAAAGGCTCAAACTCTTATAGCACTCTGCAGTACCGTGCCGGGATATTGGTTTACAGTGGCACTCATTGACCATTTGGGGAGGTTCTTTA TCCAAATGATGGGTTTCTTCTTCATGACAGTTTTTATGTTTGCCATTGCTATCCCTTACCATCACTGGACCTTAAAGCCTAATAGAATTGGGTTTGTAGT CATGTACTCATTGACCTTTTTTTTCGCCAATTTTGGACCCAACGCCACCACATTTGTTGTCCCAGCAGAGATTTTCCCTGCAAGGCTAAGGTCAACTTGT CACGGTATATCAGCAGCAGCTGGAAAGGCAGGTGCTATAATAGGTGCATTTGGTTTCCTTTATGCTGCACAAAGCACAGACCCAAAGAAGACTGACGCAG GTTACCCTCCTGGTATTGGAGTCAGATGGTCTCTAATTGTGCTCGGTATTGTTAACTTCGTAGGAATGTTATTTACTCTATTGGTTCCCGAAGCAAAGGG TAAATCACTTGAAGAGTTGTCAGGGGAGAACGGTGATGAAAATGATGGGGAGAAGCAGGCTGCTTCAGCTAGGATGGCTTCAGTGTGA
AA sequence Show only first row Show all	>Potri.010G071600.2 pacid=42798759 polypeptide=Potri.010G071600.2.p locus=Potri.010G071600 ID=Potri.010G071600.2.v4.1 annot-version=v4.1 MKVETFINSWPLSTPNNNPLSFSPLSLPLQLYPIFSHWCNSLKEAVQEIYYTAKREGLGMAREQLVVLNALDLAKTQWYHFTAIVIAGMGFFTDAYDLFC ISLVTKLLGRIYYTKPGAPKPGTLPPNVAAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGITLVLMVLCSLASGLSFGSSANGTIATLCFFRFWLGFGI GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALVVSAAFDHRFKTPSYHENPAASLAPQADYIWRIILMFGAVPAGLTFYWRMKMPETAR YTALVAKNAKQAASDMSKVLNVEFEVEEEKIQRIAQEPANSFGLFSKEFAKRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAINWIPPAATMNAIDEV FRIAKAQTLIALCSTVPGYWFTVALIDHLGRFFIQMMGFFFMTVFMFAIAIPYHHWTLKPNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTC HGISAAAGKAGAIIGAFGFLYAAQSTDPKKTDAGYPPGIGVRWSLIVLGIVNFVGMLFTLLVPEAKGKSLEELSGENGDENDGEKQAASARMASV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071600 [exp]	0	1
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071700 [exp]	1.00	0.9847	PtrPht1-2,PT2.9
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	2.82	0.9789
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G127400 [exp]	3.60	0.9673
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	3.87	0.9728
AT1G52540			Protein kinase superfamily pro...		Potri.015G134500 [exp]	4.00	0.9728
AT2G45220			Plant invertase/pectin methyle...		Potri.014G067100 [exp]	6.00	0.9628	Pt-PE9.1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	7.48	0.9700
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G079500 [exp]	7.74	0.9721	Pt-WRKY72.1
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.012G048900 [exp]	7.93	0.9690
AT3G13840	GRAS		GRAS family transcription fact...		Potri.001G168800 [exp]	8.00	0.9466

Compare expression of checked genes

Potri.010G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.