Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43420 300 / 9e-100 RING/U-box superfamily protein (.1) AT1G04360 296 / 2e-98 RING/U-box superfamily protein (.1) AT3G16720 100 / 1e-23 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G03550 96 / 6e-22 RING/U-box superfamily protein (.1) AT4G17905 93 / 2e-21 ATL4H RING/U-box superfamily protein (.1) AT3G48030 92 / 7e-21 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT1G23980 92 / 8e-21 RING/U-box superfamily protein (.1) AT5G17600 91 / 4e-20 RING/U-box superfamily protein (.1) AT4G40070 89 / 6e-20 RING/U-box superfamily protein (.1) AT2G27940 87 / 1e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165900 [exp] 542 / 0 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 290 / 2e-96 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 106 / 8e-26 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 101 / 5e-24 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 98 / 7e-23 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 95 / 2e-22 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 96 / 4e-22 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 96 / 9e-22 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 91 / 2e-21 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021197 [exp] 256 / 3e-83 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10024881 [exp] 152 / 3e-43 AT1G04360 153 / 2e-43 RING/U-box superfamily protein (.1) Lus10000710 [exp] 143 / 1e-39 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10012745 [exp] 100 / 2e-23 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10013618 [exp] 90 / 4e-20 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10006493 [exp] 89 / 5e-20 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10036466 [exp] 91 / 6e-20 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10015167 [exp] 90 / 6e-20 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10031515 [exp] 90 / 6e-20 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10041134 [exp] 90 / 7e-20 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G072700.1 pacid=42799526 polypeptide=Potri.010G072700.1.p locus=Potri.010G072700 ID=Potri.010G072700.1.v4.1 annot-version=v4.1 ATGGATCTTGTAAGAAAAAGCTATGGTTCTCAGTCTCTTCCACCAATGACAAGTCCAGTTGGTGGCTCATCAATATTTGGACCTCGTACTCAGTCTTCAG ATACAAGTTTCCCAATTATTGCCATTGCCATAATAGGAATTTTGGCAACAGCTTTATTGCTAGTTAGCTACTACATCTTTGTCATTAAATGCTGTCTGAA TTGGCACCGCATCGATCTTCTAAGGCGATTCTCCCTATCAAGAAATAGAAATCACGAAGACCCTTTGATGGCTTACTCTCCTTCTGCTATAGAGTCTCGT GGACTTGACGAGTCAGTGATAAGGTCAATCCCAGTTTTCAAGTTCAAGAAAGAAGGCAACAACGTTAGAAACGTTGGAGAAAGAAGCTTCTGTGAATGTG CAGTTTGCTTGAACGAGTTTCAAGAAGCTGAGAAACTAAGAAGGATACCAAATTGTAGCCATGTTTTTCATATTGACTGCATTGATGTTTGGCTTCAAAG CAATGCTAATTGCCCACTTTGTAGAACAAGCATTTCGAGCACCACAAGATTCCCAATTGATCATATTATTGCTCCAAGCTCTACACCCCATGATGCAAAT CCTTACAGTGAAAGTGTCATGGGTGGAGATGAAGATTATGTTGTCATTGAGTTGAGTAATCACAACTCTACAGATCAAACATTGCTTGCAGCACAGGAAA GATTGAATTCAGGAGAGTTATCAGCGCGCTCAATTAGTCCTTCGCCAAGGAAGATAGAGCAGGGAGTTGGCCACAAGAAAGCAAGGAATCTTAACAAGGT TACCAGCATGGGAGATGAATGTATTGATACAAGAGGCAAAGATGATCAATTCGGATTGATTCAACCCATCAGGAGGTCCTTTTCAATGGACTCGTCTGCA GATCGGCAGCTCTATTTATCAATTCAAGAGATAGTGCAGCAGAGCAGGCAAGTTACTGAGGTCAGCTCTGTTGAAGGTTGTAGTGGTAGAGCCAGAAGAG CTTTCTTTTCTTTTGGTCATGGTAGAGGATCCAGAAGCTCAGTCTTACCTGTTTATTTGGAGCCGTAA
AA sequence Show only first row Show all	>Potri.010G072700.1 pacid=42799526 polypeptide=Potri.010G072700.1.p locus=Potri.010G072700 ID=Potri.010G072700.1.v4.1 annot-version=v4.1 MDLVRKSYGSQSLPPMTSPVGGSSIFGPRTQSSDTSFPIIAIAIIGILATALLLVSYYIFVIKCCLNWHRIDLLRRFSLSRNRNHEDPLMAYSPSAIESR GLDESVIRSIPVFKFKKEGNNVRNVGERSFCECAVCLNEFQEAEKLRRIPNCSHVFHIDCIDVWLQSNANCPLCRTSISSTTRFPIDHIIAPSSTPHDAN PYSESVMGGDEDYVVIELSNHNSTDQTLLAAQERLNSGELSARSISPSPRKIEQGVGHKKARNLNKVTSMGDECIDTRGKDDQFGLIQPIRRSFSMDSSA DRQLYLSIQEIVQQSRQVTEVSSVEGCSGRARRAFFSFGHGRGSRSSVLPVYLEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	4.35	0.9318
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.011G094400 [exp]	7.93	0.9281
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	8.48	0.9304
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.008G025600 [exp]	9.38	0.9225
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Potri.003G176000 [exp]	11.74	0.9249
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	11.95	0.9188	Pt-RAB8.2
AT4G23690			Disease resistance-responsive ...		Potri.001G097001 [exp]	14.49	0.9211
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	17.20	0.9267
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	17.32	0.9266
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	21.42	0.9216

Compare expression of checked genes

Potri.010G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.