Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14420 171 / 3e-55 HR-like lesion-inducing protein-related (.1) AT1G04340 156 / 3e-49 HR-like lesion-inducing protein-related (.1) AT5G43460 142 / 7e-44 HR-like lesion-inducing protein-related (.1) AT3G23190 84 / 1e-20 HR-like lesion-inducing protein-related (.1) AT3G23180 84 / 1e-20 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165200 [exp] 254 / 5e-88 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 187 / 7e-62 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.008G165100 [exp] 166 / 1e-53 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 143 / 3e-44 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.002G040900 [exp] 97 / 6e-27 AT4G14420 62 / 1e-13 HR-like lesion-inducing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041149 [exp] 197 / 2e-65 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 191 / 5e-63 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1) Lus10021205 [exp] 134 / 1e-40 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 99 / 6e-27 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10022198 [exp] 99 / 1e-24 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [poplar] [flax] DoxD-like PF05514 [poplar] [flax] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Potri.010G073400.1 pacid=42798079 polypeptide=Potri.010G073400.1.p locus=Potri.010G073400 ID=Potri.010G073400.1.v4.1 annot-version=v4.1 ATGGCTTTCGTTTCTTTCGTCGGGAGAGTTCTCTTTGCCTCTGTTTTCATTCTCTCTGCTTGGCAAGAGTTCAATGAATTTGGTACCAATGGTGGGCCGG CAGCACATCTTTTGGAGCCTAAATTCCATGTTTTCTCAAAACATGTGTCATCTCAAACTGGGTTTCAAGTGCCACATTTTGAAATGAAGCATGCAGTTGC TGCAGCTATATCTGTGAAAGCTTTTGGAAGCCTTCTTTTCATCTTTGGCAGTTCTGTTGGAGCTTATCTTCTGCTTTTGCACCAGATCATCATTACCCCA ATATTGTATGATTTTTACAACTACGATGCTGACACTAAGGAATTTAATCTGCTCTTTGCGAAGTTCGCACAGAACTTGGCACTGTTTGGGGCATTGCTCT TTTTTATTGGCATGAAGAACTCAATCCCAAGGAGGCAACTGAAGAAAAAGTCTCCCAAATCAAAAACAACATAA
AA sequence Show only first row Show all	>Potri.010G073400.1 pacid=42798079 polypeptide=Potri.010G073400.1.p locus=Potri.010G073400 ID=Potri.010G073400.1.v4.1 annot-version=v4.1 MAFVSFVGRVLFASVFILSAWQEFNEFGTNGGPAAHLLEPKFHVFSKHVSSQTGFQVPHFEMKHAVAAAISVKAFGSLLFIFGSSVGAYLLLLHQIIITP ILYDFYNYDADTKEFNLLFAKFAQNLALFGALLFFIGMKNSIPRRQLKKKSPKSKTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14420			HR-like lesion-inducing protei...		Potri.010G073400 [exp]	0	1
AT2G25310			Protein of unknown function (D...		Potri.006G257100 [exp]	3.46	0.9322
AT1G16170			unknown protein		Potri.001G038200 [exp]	3.46	0.9346
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	3.87	0.9336
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.014G116500 [exp]	6.48	0.9354	Pt-ARF1.1
AT1G23220			Dynein light chain type 1 fami...		Potri.010G108700 [exp]	6.85	0.9100
AT4G01897			unknown protein		Potri.002G191200 [exp]	7.00	0.9092
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Potri.006G004500 [exp]	10.48	0.9174
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.019G092500 [exp]	10.72	0.9317	RAB11.11
AT4G00585			unknown protein		Potri.002G155800 [exp]	11.00	0.9239
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.014G017701 [exp]	13.26	0.9109

Compare expression of checked genes

Potri.010G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.