Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43460 149 / 1e-46 HR-like lesion-inducing protein-related (.1) AT1G04340 147 / 7e-46 HR-like lesion-inducing protein-related (.1) AT4G14420 87 / 2e-22 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165100 [exp] 213 / 8e-72 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.008G165200 [exp] 142 / 1e-43 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 142 / 1e-43 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.010G073400 [exp] 132 / 6e-40 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021205 [exp] 169 / 2e-54 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041149 [exp] 117 / 6e-34 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 115 / 1e-33 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 114 / 5e-33 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1) Lus10022198 [exp] 118 / 3e-31 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [poplar] [flax] DoxD-like PF05514 [poplar] [flax] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Potri.010G073500.1 pacid=42796999 polypeptide=Potri.010G073500.1.p locus=Potri.010G073500 ID=Potri.010G073500.1.v4.1 annot-version=v4.1 ATGGGGTTTTTCTCTTTTCTCGGCAGAGTTCTCTTCGCTTCCCTCTTCATCCTCTCAGCTTGGCAAATGTTCAACGAATTTGGCGAAGATGGTGGCCCTG CTGTGCCGGAATTGATTTCCAAGCTTGCTATTGTCAAGAAGCATATTTCCTCTCAATTGGGGGTAGTGGTCTCGGACATTGATCCTAGACATTTGGTAGC GGGCATGATTGTTCTAAAGGGTCTTGGAGGCTTTTTATTTGTATTTGGCAGCCCTTTTGGTGCTTATCTCCTGCTTACCTACTTGGCGCTTTCCTCCCCA ATTCTGTACAACTTCTATGACTACGATCGGGATGAGTCCAAGTACTTTGTTCTGTTAAATGAATTTTTGCAGAGCGTTGCACTTTTTGGTGCATTGCTTT TCTTCATAGGGATGAAGAACTTGATTCCAAATAGACAGCTCAAGAAGAAGACTCCCAAGGCAAAAGTGGGCTAG
AA sequence Show only first row Show all	>Potri.010G073500.1 pacid=42796999 polypeptide=Potri.010G073500.1.p locus=Potri.010G073500 ID=Potri.010G073500.1.v4.1 annot-version=v4.1 MGFFSFLGRVLFASLFILSAWQMFNEFGEDGGPAVPELISKLAIVKKHISSQLGVVVSDIDPRHLVAGMIVLKGLGGFLFVFGSPFGAYLLLTYLALSSP ILYNFYDYDRDESKYFVLLNEFLQSVALFGALLFFIGMKNLIPNRQLKKKTPKAKVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	0	1
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	1.00	0.9581	KDSA.1
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.006G129500 [exp]	2.00	0.9527	Pt-SYP71.3
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	2.44	0.9433
AT4G14420			HR-like lesion-inducing protei...		Potri.010G073400 [exp]	3.87	0.9336
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	4.00	0.9426	Pt-FAH1.1
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.015G038800 [exp]	5.29	0.9257
AT3G56810			unknown protein		Potri.006G026600 [exp]	6.92	0.9332
AT1G23220			Dynein light chain type 1 fami...		Potri.010G108700 [exp]	11.40	0.9037
AT1G20530			Protein of unknown function (D...		Potri.005G249400 [exp]	12.24	0.9301
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	12.32	0.9315

Compare expression of checked genes

Potri.010G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.