Plant FIBer expression Database

Potri.010G073600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43500 775 / 0 ATARP9 actin-related protein 9 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G165000
[exp]
1149 / 0 AT5G43500 773 / 0.0 actin-related protein 9 (.1.2)
Potri.012G061300
[exp]
46 / 5e-05 AT1G18450 705 / 0.0 actin-related protein 4 (.1)
Potri.006G139900
[exp]
44 / 0.0002 AT5G09810 554 / 0.0 actin 7 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022198
[exp]
900 / 0 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
Lus10021206
[exp]
177 / 5e-52 AT5G43500 117 / 6e-23 actin-related protein 9 (.1.2)
Lus10032484
[exp]
57 / 4e-08 AT1G18450 690 / 0.0 actin-related protein 4 (.1)
Lus10042980
[exp]
48 / 2e-05 AT1G18450 578 / 0.0 actin-related protein 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0108 Actin_ATPase PF00022 Actin Actin
Representative CDS sequence
>Potri.010G073600.2 pacid=42798234 polypeptide=Potri.010G073600.2.p locus=Potri.010G073600 ID=Potri.010G073600.2.v4.1 annot-version=v4.1
ATGGATTACTTGAAGACGGTAATCCCTTCACAGCTCGTCTCCGACCGAGGATCCAATTTAGTAGTCATCAATCCAGGCTCTGCAAATATCCGAATAGGAT
TAGCTACACAAGATGCACCGTTAAATATTCCTCACTGCATTGCTCGTTATACTAATCAAATTCCCAAATTCAAAGTCCAAGATCAGATGCTGAATTCGCA
GATTACAACAGTACAGCATATGGAACGCGAGAAGGCATATGATATAATAGCATCGTTATTGAAAATACCTTTTCTGGATGAAGAGGTTGCCCACAATTCT
TTCCCACGCAAGATAGGACGTGCTGATGGATACAATCCACAGAGTGGCAGGGGTGTGGCTTTCCAATGGGCTAATGTATATGAGCAGGACACTAATTCCT
CTTTGGCTTTAGGATCATCAAAAAATGAAGGTACAAGTGGCGAGTATGTGAAGAAACATGAAGGCACTGATGCTGAGGGGATTAGTTCAGGGGAACGCAA
ATTCAGAGGACACATTTTTGGTGAAGAAGCGCTTAGAATCTCCCCAACAGAGCCATACTGCTTAAGCCGTCCTATTCGCAGAGGTCATTTCAACATCTCA
CAACATTATCCTTTGCAGCAGGTGCTTGAGGACATACATGCTATTTGGGATTGGATATTGATAGAGAAACTGCATATCCCTCACTCGGAAAGAAACATGT
ATTCTGCGATCCTTGTTTTGCCAGAAACATTTGATAATCGCGAAATAAAGGAAATGCTGTCTATAGCATTACGAGACTTGCGCTTTAGCTCTGCAGTAGT
ACACCAGGAAGGTCTTGCTGCAGTTTTTGGGAATGGGTTATCGACAGCATGCATTGTTAATATGGGTGCTCAGGTGACATCTGTTGTTTGTGTTGAGGAT
GGTGTGGCTCTACCTAGTACAGAAAAGACTTTGCCTTTTGGTGGAGAGGATATATCAAGATGCCTTCTGTGGACTCAGAGGCATCATCAGACATGGCCCC
AGGTTCGGACTGACATGTTGACAAAGCCTATAGATTTGTTGATGCTTAACCGTCTTAAAGAGTCCTATTGTAAAATAAAGGAGGGGGAGCTTGATGCTGT
TACTGTAGTTCATTCTTATGAGGATGGCATGCCTGCTGGATCTCACAAAACTCGACTAACTGCTCTTAATGTGCCTCCCATGGGTCTGTTCTACCCCACA
CTTTTGGTTCCAGATATATATCCTCCACCACCTCGTTCTTGGTTCCATGACTATGAGAATATGCTCGAAGATACATTGCATTTAGAATATCCTAGAAGGC
CTGACATGTCAGATGGTTTATTTCCTGGCATTAATGTTGGATATCCTATGTGGGAGAGCTATCCGATTTTTCCTTCTAAGCCTAAGAAAGAAGAGAAGGT
TGGCCTTGCTGAAGCTATCACTAGTAGCATTCTTTCCACTGGTCGTATAGACCTCCAAAGAAAGTTGTTTTGCAGTATACAATTGATTGGTGGAGAGGCT
TTGACAGCTGGTTTTATTCCTGCTGTGGAGGAAAGAGTTTTACATGCAATTCCCTCAAATGAAGCAATTGATACTGTTGAGGTTCTACAGTCGAGAACAA
ATCCAACTTTTGTGTCTTGGAAAGGCGGAGCAATCCTTGGAGTTCTTGATTTTGGTCGTGATGCTTGGATTTATAGGGAGGACTGGATTCGGAATGGGAT
CCACGTTCAAAGTGGCAGAAAATACAAGGACTCGTACTATCTTCAAGCTCAAGCAACATGCTATATAAATTCTTAG
AA sequence
>Potri.010G073600.2 pacid=42798234 polypeptide=Potri.010G073600.2.p locus=Potri.010G073600 ID=Potri.010G073600.2.v4.1 annot-version=v4.1
MDYLKTVIPSQLVSDRGSNLVVINPGSANIRIGLATQDAPLNIPHCIARYTNQIPKFKVQDQMLNSQITTVQHMEREKAYDIIASLLKIPFLDEEVAHNS
FPRKIGRADGYNPQSGRGVAFQWANVYEQDTNSSLALGSSKNEGTSGEYVKKHEGTDAEGISSGERKFRGHIFGEEALRISPTEPYCLSRPIRRGHFNIS
QHYPLQQVLEDIHAIWDWILIEKLHIPHSERNMYSAILVLPETFDNREIKEMLSIALRDLRFSSAVVHQEGLAAVFGNGLSTACIVNMGAQVTSVVCVED
GVALPSTEKTLPFGGEDISRCLLWTQRHHQTWPQVRTDMLTKPIDLLMLNRLKESYCKIKEGELDAVTVVHSYEDGMPAGSHKTRLTALNVPPMGLFYPT
LLVPDIYPPPPRSWFHDYENMLEDTLHLEYPRRPDMSDGLFPGINVGYPMWESYPIFPSKPKKEEKVGLAEAITSSILSTGRIDLQRKLFCSIQLIGGEA
LTAGFIPAVEERVLHAIPSNEAIDTVEVLQSRTNPTFVSWKGGAILGVLDFGRDAWIYREDWIRNGIHVQSGRKYKDSYYLQAQATCYINS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Potri.010G073600
[exp]
0 1
AT5G27540 MIRO1, EMB2473 embryo defective 2473, MIRO-re... Potri.005G033700
[exp]
1.41 0.6982
AT2G21120 Protein of unknown function (D... Potri.001G305700
[exp]
4.00 0.6812
AT4G22670 ATHIP1, TPR11 tetratricopeptide repeat 11, H... Potri.003G114000
[exp]
8.83 0.6329
AT1G51610 Cation efflux family protein (... Potri.010G251300
[exp]
9.48 0.6593
AT5G62600 MOS14 modifier of snc1-1, 14, ARM re... Potri.015G068600
[exp]
19.07 0.6455
AT3G19960 ATM1, ATATM myosin 1 (.1.2) Potri.007G074800
[exp]
22.91 0.6370
AT1G05500 SYT5, NTMCTYPE2... synaptotagmin 5, ARABIDOPSIS T... Potri.006G063900
[exp]
23.04 0.6620
AT4G11270 Transducin/WD40 repeat-like su... Potri.001G098700
[exp]
28.28 0.6256
AT2G41890 curculin-like (mannose-binding... Potri.016G053800
[exp]
29.84 0.6313
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Potri.018G038000
[exp]
33.58 0.6702 MYB222

Potri.010G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.