Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ETR2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23150 877 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 830 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 609 / 0 ERS2 ethylene response sensor 2 (.1) AT1G66340 485 / 3e-161 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 371 / 5e-119 ERS1 ethylene response sensor 1 (.1) AT5G35750 79 / 7e-15 AHK2 histidine kinase 2 (.1) AT2G01830 75 / 2e-13 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 74 / 3e-13 AHK3 histidine kinase 3 (.1) AT5G10720 63 / 6e-10 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 50 / 1e-05 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G164400 [exp] 1328 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.013G044100 [exp] 929 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 919 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.001G204200 [exp] 489 / 7e-163 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 488 / 1e-162 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 405 / 1e-131 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.010G102900 [exp] 80 / 4e-15 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 76 / 7e-14 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 76 / 1e-13 AT1G27320 1425 / 0.0 histidine kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022203 [exp] 1142 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 1141 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 1072 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 1071 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 912 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 901 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 900 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 897 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10020778 [exp] 491 / 2e-163 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 486 / 9e-162 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0161 [poplar] [flax] GAF PF01590 [poplar] [flax] GAF GAF domain
Representative CDS sequence Show only first row Show all	>Potri.010G074300.4 pacid=42797383 polypeptide=Potri.010G074300.4.p locus=Potri.010G074300 ID=Potri.010G074300.4.v4.1 annot-version=v4.1 ATGGCCGCAATGTTAAAAGCATTAGCTCCTGGGCTGCTGTTGATTTTTTTATTCCTGATATCAGCATCTGCGAACGACAACGAATTTTCACGATGTAATT GTGAAGATGAGGGCAGTTTATGGAGCATAGACAGTATTCTTGAGAGCCAAAGAGTGAGTGATTTCTTGATTGCTGTGGCCTATTTTTCAATCCCTATTGA GCTGCTGTACTTCGTTAGCTGCTCAAATGTCCCATTTAAATGGGTTCTCTTTGAGTTCATTGCTTTCATTGTTCTATGTGGATTGACCCATTTGATCAAT GGCATGACCTATGGCCCCCACACATTTCAGCTTATGCTTGCCCTAACTGTCTTCAAGATATTAACTGCTCTGGTTTCTTGTGCCACTGCGATTACTCTTT TCACTCTCATTCCTTTGCTTCTCAAAGTGAAGGTGAGAGAATTCATGTTGAAGAAGAAGGCATGGGATCTTGGTCGTGAAGTTGGGATTATAATGAAACA GAAAGAAGCTGGGTTGCATGTTCGAATGCTTACTCAAGAGATTCGAAAATCGCTTGATAGACATACGATTCTGTATACTACCCTTGTTGAGTTATCAAAG ACATTGGGGTTGCAAAATTGTGCTGTTTGGATGCCTAATGAAATCAGAACCCAGATGGACTTGACTCATGAGTTAAATAGAGGTAATTATTTGAGTTCAG ATAATCTTTCAATTCCAATCACTGATCCTGATGTTCTTAGGATTAAACAAAGTGAAGCAGTAAACATGCTTAGGCCTGACTCTGCACTTGCTGCTGCAAG CCATGGGGAGTCTGGTGAGCCAGGGCCTGTAGCTGCAATTCGAATGCCGACACTTCGTGTCTGCAATTTCAAAGGAGGGACTCCTGAGATAATTGAGGCC TGTTATGCAATATTGGTGTTGGTTCTCCCAGGTGGACAACCCAGATCTTGGACCAACCAGGAAGTAGAGATAATTAAGGTGGTAGCTGATCAGGTGGCTG TGGCTCTCTCCCATGCTGCAGTTCTTGAAGAGTCCCAGCTTATGAGGGAGAAGTTGGAGGAGCAAAACCGAGCTCTACAACAGGCCAGAAAGAATGCAAT GATGGCAAGCAAAGCTAGGGGTGCATTTCAGAAGGTAATGAGTGATGGGATGAAGAGGCCAATGCATTCGATCTTGGGTTTGATTTCAATGATACAGGAT GGGAATTTGAGTGGTGAGCAACGAATTATTGTTGATGCAATGATGAGGACTAGCAATGTCCTATCAACGTTGATAAATGATGTGATTGAAATTTCAACAA AGGATAGTGGAAGATTTCCATTGGAGATTAGATCTTTTGGGTTACATGCCATGATCAAAGAAGCAGCTTGCCTTGCCAAATGCTTGTGTGTTTATAGGGG CTTTTGTTTTTCAATTGAGGTTGACAAGTCCCTGCCGGATCATGTTATGGGCGATGAAAGGAGGGTTTTTCAGGTGATTTTACATATGGTTGGGAACCTA CTTGATCACAACAATGGAGGAGGGTCTGCAGTGCTTCGGGTTTTCTCTGAGAATGGAAGTCAGGAGAGGAATGATCAGAAATGGACAGCGTGGAGGCAAA GCATTTCTGATGGGGATGTATATATCAGATTTGAATTTGCAATAAACAGTAGTGTTTCTGAGTCAGAGGGCTCAACTTCAATGTCGCAACTTAGTGGTAA GAGGTATGCCAGTGACGGTGTTGAGGAGGGCTTGAGCTTCAGCATCTGCAAAAAGCTGGTCCATTTGATGCAGGGTAAGATCTGGATGGTGCCCAATTCT CAAGGCCTTGCTGAAAGCATGGGGTTTGTTCTTCGGTTTCAGCTTCGACCATCCATATCAATAGCCATCTCTGAATCTGGAGAATCCTCAGAGCACCCAC ATTCCAACTCTCTGTTCAGAGGTTTGCAGGTTCTATTAGCTGATGCTGATGATTTGAACAGAGCTGTGACTCGGAGGCTGCTTGAGAAGCTAGGTTGCAG TGTTGCTACTGTTTCATCTGGGTTTGACTGCCTTAGTGCTATTGGTCCAGCTGCATCTTCTTTCCAAATAGTTCTTTTGGATCTTCAGATGCCTGAGTTG GATGGATTTGAAATTGCTGTGAGAATCCGGAAGTTTAGAAGTCGAAGTTGGCCTTTGATCATTGCCTTGACAGCAAGTTCTGATGACGAAGTGTGGGACA AATGCAAGCAGATTGGAATCAATGGAGTCATTCGGAAACCAGTTGTTCTACAAGGAATTGCCAATGAGCTACGAAGAGTCGTGCTTCTGGCAAACAAGGC TGTTTGA
AA sequence Show only first row Show all	>Potri.010G074300.4 pacid=42797383 polypeptide=Potri.010G074300.4.p locus=Potri.010G074300 ID=Potri.010G074300.4.v4.1 annot-version=v4.1 MAAMLKALAPGLLLIFLFLISASANDNEFSRCNCEDEGSLWSIDSILESQRVSDFLIAVAYFSIPIELLYFVSCSNVPFKWVLFEFIAFIVLCGLTHLIN GMTYGPHTFQLMLALTVFKILTALVSCATAITLFTLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGLHVRMLTQEIRKSLDRHTILYTTLVELSK TLGLQNCAVWMPNEIRTQMDLTHELNRGNYLSSDNLSIPITDPDVLRIKQSEAVNMLRPDSALAAASHGESGEPGPVAAIRMPTLRVCNFKGGTPEIIEA CYAILVLVLPGGQPRSWTNQEVEIIKVVADQVAVALSHAAVLEESQLMREKLEEQNRALQQARKNAMMASKARGAFQKVMSDGMKRPMHSILGLISMIQD GNLSGEQRIIVDAMMRTSNVLSTLINDVIEISTKDSGRFPLEIRSFGLHAMIKEAACLAKCLCVYRGFCFSIEVDKSLPDHVMGDERRVFQVILHMVGNL LDHNNGGGSAVLRVFSENGSQERNDQKWTAWRQSISDGDVYIRFEFAINSSVSESEGSTSMSQLSGKRYASDGVEEGLSFSICKKLVHLMQGKIWMVPNS QGLAESMGFVLRFQLRPSISIAISESGESSEHPHSNSLFRGLQVLLADADDLNRAVTRRLLEKLGCSVATVSSGFDCLSAIGPAASSFQIVLLDLQMPEL DGFEIAVRIRKFRSRSWPLIIALTASSDDEVWDKCKQIGINGVIRKPVVLQGIANELRRVVLLANKAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.010G074300 [exp]	0	1	Pt-ETR2.3
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.008G164400 [exp]	2.00	0.8425	ETR2.2
AT2G44080		ARL	ARGOS-like (.1)		Potri.017G001400 [exp]	3.16	0.7890
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.008G067000 [exp]	3.46	0.7319	Pt-ATE1.3
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	7.00	0.7285
					Potri.008G164250 [exp]	8.48	0.7465
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	8.94	0.6696	ERS1.1,ETR1
AT3G51130			unknown protein		Potri.007G015800 [exp]	12.84	0.7422
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.010G192400 [exp]	13.49	0.6402
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032200 [exp]	20.61	0.6238
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	25.65	0.5780

Compare expression of checked genes

Potri.010G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.