Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24010 468 / 4e-155 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G24000 456 / 1e-150 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G23990 453 / 2e-149 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT1G55850 428 / 6e-140 ATCSLE1 cellulose synthase like E1 (.1) AT5G17420 400 / 7e-126 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 398 / 1e-125 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT2G21770 371 / 2e-114 CESA09, CESA9 cellulose synthase A9 (.1) AT4G32410 349 / 3e-106 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G32540 331 / 1e-102 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32530 330 / 5e-102 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074800 [exp] 838 / 0 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.003G142400 [exp] 480 / 1e-159 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 471 / 3e-156 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004300 [exp] 456 / 2e-150 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.001G369100 [exp] 449 / 6e-148 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.011G069600 [exp] 394 / 6e-124 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.004G059600 [exp] 393 / 9e-124 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.018G103900 [exp] 391 / 2e-122 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 384 / 9e-120 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016625 [exp] 464 / 3e-153 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10023057 [exp] 459 / 1e-151 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 456 / 2e-150 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 442 / 5e-145 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 422 / 9e-137 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10006161 [exp] 379 / 1e-117 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 377 / 2e-117 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 377 / 2e-117 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10030035 [exp] 331 / 1e-101 AT2G32540 669 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Lus10026610 [exp] 308 / 2e-91 AT3G03050 1028 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.010G074700.1 pacid=42796825 polypeptide=Potri.010G074700.1.p locus=Potri.010G074700 ID=Potri.010G074700.1.v4.1 annot-version=v4.1 ATGAAGTCTCTTCCTCTCCATGCCTGCACTCCTAGCATATCCTCTGCCATAATCAACCGCTCATATTCTCTCCTTCATTTCACAGCCTTAGTAGCCTTGT TCTATTACAGACTCTCTTCTTTTCTATCCTCAAAACCAAAAGCTTCACTTCCTTATCTTCTAGTCTTTGCCTCTGAGATGCTGCTCTCTATCATATGGCT TTTTGACCAAGCTTATACGTGGAGGCCAGTTTCTCGAACAACTTTCCCGGAAAGATTGCCAGAGGATGAAGAGCTTCCTGGTATTGATGTGTTCATATGC ACTGCAGACCACAAGAAGGAACCACCTCTGGAAGTAATGAACACTGTTTTGTCAGCTATGGCACTGGATTATCCACCCGATAAGCTTTCTGTGTATCTTT CGGATGATGGGGGCTCATCTTTAACATTACAAGGTATGAGAGAGGCTTGGTTGTTTGCCAGGTCCTGGCTTCCTTTTTGTAGAAGGTTTGGAATCAAGAT TAGGTGTCCTAAGGTTTATTTTTCAAGTTTGGAAGATAATTATTCTGGCCCCCTTCATTCTCTGGAATACGAGGAGGAAAAGGAGAAGATCAAGGGAAAA TACGAGCTTTTCAAAGAACGTGTCAATAAAGCAGGAGAAATTATTGGAAGTGAAGAGGCCACAAACAGCAAAGATCATCCTCCGGTAATCGAGGTGATAA ATGATGAGCCTAAAAATGTTGCTGCAATAAGACAAGCTAAAATGCCTCTTCTTGTCTACGTTTCTCGTGAGAAAAGGCCTTCTCATTCTCATCATTTCAA AGCTGGAGCACTAAATGTTCTTCTTAGGGTCTCTGGTATCATGACCAACTCGCCTTACATATTGGTACTGGATTGTGACATGTACTGTAATGACCCAACA TCTGCAAGGCAAGCAATGTGTTTCCACCTTGATCCAAAAATTTCTCCCTCGCTGGCTTTCATTCAATTCCCTCAGAAATTTCATAACATCAACAAGAATG ACATCTATGATGGGCAGCTGAGAAAACTATTCGTGATAAGGTGGCCAGGAATTGATGGGCTTCAAGGACCCATTCTGTCTGGCACTGGATTTTACATGAA GAGAGAAGCATTGTATGGCAATCTTTCAGAGAAAGATGTCATGCGTCTAAAACAATCTTTTGGACATTCGAATGAGTTTATCATGTTGATTTACAAAATC TATCAATATTGCGCCATCAAGAATACAGAATCATCAAGCAAACTCCAACAAGAGGCCCCATTTTTATCCTCTTGCACCTATGAGAAAAACACTCTATGGG GTGAACAGATGGGTTTCTTGTATCATTCTGTAGTAGAGGATTATTTTACTGGGTTCATCTTGCATTGCAAAGGGAAAACTTCTGTTTTTTGTAATCCTTC AAAGCCAGCATTCTTGGGCAGCTCTACCACAAATTTGAATGACTTGCTAGTTCAAGGAACGAGATGGAACTCTGGGTTGTTTGAAGTTACCCTCTCAAAG TTCTGCCCTTTCATTTATGGCCTATCGAGAATGCCATTACTTCAAACCATGTGCTATGGCTACCTTGCACTTCAGCCTCTCTATTTCTTGCCCTTGTGGT GTTTAGCTACGCTGCCTCAACTTTGTCTCCTTAATGGCATCCCCATATACCCTCAGGTTTCATCTTCATGGTTTATGGTCTTTTCGTTCATTTTTCTAGC TTCTCTCTTGAAACATTTAGAAGAGATTCTATCCACAGGAGCCTCGATCCAGACCTTGTTAAATGAGCAGCGCGTTTGGATGATGAAGTCAGTTACCGCC TACACATTTGGTAGTTTAGATGCTATCATGAAATGCTTTGGCATGAGAGAAGCCAGTTTCCTGCCAACAAACAAAGTAGCCGATGATGAACAAGTTGCAT TATATCAAATGGGAAAACTGAATTTCCAAGCATCAACAATGATACTTACGCCAATTATTACATTAATCATTCTGAACATAGTTTCCTTTATTGGAGGAGT CGCTAGGATGTTCATTGCAGGAAGTTGGAATGAAACATTTGGGCAGGTATTCCTATCACTTTACATATTGATGGTAAACTACCCTGTAATTGAAGGAATG TTACTGAGGAAGGATAAAGGACGTGTTCCCACTCCAGTCACCTTGTTGTCTCTTGTAATCACCATTTTCTTGTTGTGCTTGGGACATATGACTCTGAGTT GGTAA
AA sequence Show only first row Show all	>Potri.010G074700.1 pacid=42796825 polypeptide=Potri.010G074700.1.p locus=Potri.010G074700 ID=Potri.010G074700.1.v4.1 annot-version=v4.1 MKSLPLHACTPSISSAIINRSYSLLHFTALVALFYYRLSSFLSSKPKASLPYLLVFASEMLLSIIWLFDQAYTWRPVSRTTFPERLPEDEELPGIDVFIC TADHKKEPPLEVMNTVLSAMALDYPPDKLSVYLSDDGGSSLTLQGMREAWLFARSWLPFCRRFGIKIRCPKVYFSSLEDNYSGPLHSLEYEEEKEKIKGK YELFKERVNKAGEIIGSEEATNSKDHPPVIEVINDEPKNVAAIRQAKMPLLVYVSREKRPSHSHHFKAGALNVLLRVSGIMTNSPYILVLDCDMYCNDPT SARQAMCFHLDPKISPSLAFIQFPQKFHNINKNDIYDGQLRKLFVIRWPGIDGLQGPILSGTGFYMKREALYGNLSEKDVMRLKQSFGHSNEFIMLIYKI YQYCAIKNTESSSKLQQEAPFLSSCTYEKNTLWGEQMGFLYHSVVEDYFTGFILHCKGKTSVFCNPSKPAFLGSSTTNLNDLLVQGTRWNSGLFEVTLSK FCPFIYGLSRMPLLQTMCYGYLALQPLYFLPLWCLATLPQLCLLNGIPIYPQVSSSWFMVFSFIFLASLLKHLEEILSTGASIQTLLNEQRVWMMKSVTA YTFGSLDAIMKCFGMREASFLPTNKVADDEQVALYQMGKLNFQASTMILTPIITLIILNIVSFIGGVARMFIAGSWNETFGQVFLSLYILMVNYPVIEGM LLRKDKGRVPTPVTLLSLVITIFLLCLGHMTLSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074700 [exp]	0	1
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G118401 [exp]	2.82	0.8934
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.014G130900 [exp]	5.47	0.8356
AT1G66920			Protein kinase superfamily pro...		Potri.017G117285 [exp]	13.41	0.8928
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.012G019300 [exp]	14.83	0.8447
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G059600 [exp]	15.23	0.8494
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	15.68	0.8844	RD21.1
AT5G38260			Protein kinase superfamily pro...		Potri.017G007900 [exp]	23.66	0.8249
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.003G058900 [exp]	25.98	0.8617	AATP1.2
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	28.28	0.8291
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	29.29	0.8184

Compare expression of checked genes

Potri.010G074700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.