Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24000 471 / 3e-156 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G23990 455 / 7e-150 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24010 452 / 2e-148 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT1G55850 410 / 6e-133 ATCSLE1 cellulose synthase like E1 (.1) AT5G17420 408 / 8e-129 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 404 / 9e-128 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT4G32410 387 / 2e-120 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G21770 385 / 1e-119 CESA09, CESA9 cellulose synthase A9 (.1) AT2G32530 357 / 2e-112 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32540 352 / 4e-110 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074700 [exp] 840 / 0 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.003G142400 [exp] 484 / 4e-161 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 468 / 9e-155 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.001G369100 [exp] 452 / 9e-149 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004300 [exp] 450 / 3e-148 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.011G069600 [exp] 411 / 2e-130 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.006G181900 [exp] 405 / 2e-127 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 404 / 3e-127 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.005G027600 [exp] 395 / 2e-123 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 444 / 1e-145 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 440 / 5e-144 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 427 / 8e-139 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10023056 [exp] 426 / 1e-138 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 426 / 3e-138 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10006161 [exp] 395 / 2e-123 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10030035 [exp] 328 / 2e-100 AT2G32540 669 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Lus10000755 [exp] 327 / 1e-98 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10010024 [exp] 327 / 1e-97 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10030453 [exp] 322 / 1e-97 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.010G074800.7 pacid=42797453 polypeptide=Potri.010G074800.7.p locus=Potri.010G074800 ID=Potri.010G074800.7.v4.1 annot-version=v4.1 ATGGAGATCTCTCCACCCCTCCATTTATGCCATGTCTCAAAGACATCAATTTTCATCAACAGATTACATGGACTCCTCCACTCTATTGCTATAGCTTTCT TGATCTACTACAGAGCTTCCTTTCTCTTCCAAGAGCCCCAAACCAAAGCCACAGTTCCCATGTTACTATGGCTTCTAGTTTTTGTCGCTGAGCTGCTTCT CTCCTTTATATGGCTGATTGGCCAAGCCTATCACTGGCATCCCGTTTCTCGCACAGTTTTCCCTGAAAGACTGCCTGAGGATGATAAACTCCCGGCCATT GATGTATTTATATGTACTGTGGATCCTGACAAGGAGCCAACCTTAGACGTAATGAACACTGTTCTATCGGCCATGGCATTGGATTATCCGGCAGAGAAGC TTAATTTGTATTTATCGGATGACGGTGGCGCAGCTGTTACTTTGCATGGTATGAAAGAAGCTTGGAGGTTTGCAAAATCTTGGCTACCATTTTGTAAGAA GTATGGAATCAAGACAAGATGTCCCAAGGCTTACTTTTCAGCAACATCCAAGGATGATGATAGCTTTGGAAGCTCTAATGAGTTCATGGCAGACAGGCAA ATAATTCAGGAAAAATACGAGGATTTTAAGGAACGTGTGATGAGGTTTCGAGAAGATTTCGTCTTGGAAGAGACGAAAAGTGATATTACAGGTCGAGATC ATCCTGCTCTTATTGAGGTGATACAAGATAATTCAAATGAGGAAGCTCCAAAAGATGAAGCTAATGAGATGCCCCTTCTTGTTTACGTTTCTCGTGAGAA GAGGCCTTCTCATCCTCACCATTTCAAGGCTGGAGCCCTTAATGTCCTTCTTAGGGTCTCTGGGGTGATAAGCAATTCTCCTCATATACTAGTGCTGGAC TGTGACATGTATTGCAACGACCCAACTTCAGCTAGGCAAGCGATGTGTTTCTTCTTTGATCCTAATATCTCTTCCTCGCTGGCATTTGTTCAGTTCCCTC AGAGGTTTCATAACATTAGCAAACATGATATCTATGACAGTCAGCTAAGATCCACTTTCGGGATACTATGGCAAGGTTTAGATGGGCTGAAGGGACCAGT CTTGTCTGGCACTGGCTTTTATATCAAGAGGAACTCACTCTATGGCGATTCTATGCAAAAAGGTTGCAACCTTCTTGAACTTAGAGACACTTTCGGCTTA TCAAATGAATTCGTAAATTCCATTCGACAAAACTACAAGGCTAATCCGATGAGTTATGGGAGCGTTTCCAGCATGTTGCTTCAAGAGACTAGAATTTTAG CCTCATGTGACTATCCAAGACACACAAAATGGGGTGAAGAGGTAGGTTTTTTGTACCATTCAGTCGCGGAAGATTTCTTCACAGGTTTCATTTTACACTG CAAAGGCTGGTTATCAGTCTATCTTAACCCATCGAGGCCGCAATTTTTGGGCACTTCTATCACAAGTTTAAATGACCTATTGATTCAAGGCACAAGATGG AGCTCTGGGTTGGTTGAAGTTGGTCTTTCAAGGTTTTGCCCTCTTATATATGGAACTTTGAGGATGTCTTTCCTTGAGAGCTTGTGCTATGCAGAAATTT CACTTTTCCCTCTTTTCTACTGTTTGCCTTTATGGTGTTTTGCTACCATCCCTCAACTTTGTCTGCTAAATGGAATCCCGTTGTACCCCAAGGTTTCGAG TTCATTCTTCATTGTATTTTCATTCATTTTCCTATCAGCCGTCTCCAAACATTTGTATGAGGTCCTCAAAAGTGGAGGGTCAATCAATACATTGGTATAC GAACAAAGATTATGGATGATGAAGTCAGTTTCGACTCACACTTATGGGAGTTTGGATGCTGTCATGAAAAGGATAGGAGTAAGGGAAGCCAGTTTCTTGC CTACCAATAAGGCTGCTGATGAAGAAAAGTTCAAGCTCTACCAAATGGGTAAATTTGATTTCAAAACATCATCAATGTTGCTTGTTCCTATGGTTACGGT TATAATCTTGAACATGGCATCATTTGTTCTGGGAGTGATCAGAATTATCATTGCTGGCAATTGGGACAGTATGGTTGTCCAAGTTTTCCTTTCATCTTAC ATCTTAGTGATGAATTCTGCAATTATTGAAGGAATGACTATAAGGAAGGACAAGGGATGCATTCCATTATCAGTTATTGTGCTCTCTACTGTATTTTCGA TAATTTTCTTGTGTCTGGGATCTTTCTTTTTAATGTATTAA
AA sequence Show only first row Show all	>Potri.010G074800.7 pacid=42797453 polypeptide=Potri.010G074800.7.p locus=Potri.010G074800 ID=Potri.010G074800.7.v4.1 annot-version=v4.1 MEISPPLHLCHVSKTSIFINRLHGLLHSIAIAFLIYYRASFLFQEPQTKATVPMLLWLLVFVAELLLSFIWLIGQAYHWHPVSRTVFPERLPEDDKLPAI DVFICTVDPDKEPTLDVMNTVLSAMALDYPAEKLNLYLSDDGGAAVTLHGMKEAWRFAKSWLPFCKKYGIKTRCPKAYFSATSKDDDSFGSSNEFMADRQ IIQEKYEDFKERVMRFREDFVLEETKSDITGRDHPALIEVIQDNSNEEAPKDEANEMPLLVYVSREKRPSHPHHFKAGALNVLLRVSGVISNSPHILVLD CDMYCNDPTSARQAMCFFFDPNISSSLAFVQFPQRFHNISKHDIYDSQLRSTFGILWQGLDGLKGPVLSGTGFYIKRNSLYGDSMQKGCNLLELRDTFGL SNEFVNSIRQNYKANPMSYGSVSSMLLQETRILASCDYPRHTKWGEEVGFLYHSVAEDFFTGFILHCKGWLSVYLNPSRPQFLGTSITSLNDLLIQGTRW SSGLVEVGLSRFCPLIYGTLRMSFLESLCYAEISLFPLFYCLPLWCFATIPQLCLLNGIPLYPKVSSSFFIVFSFIFLSAVSKHLYEVLKSGGSINTLVY EQRLWMMKSVSTHTYGSLDAVMKRIGVREASFLPTNKAADEEKFKLYQMGKFDFKTSSMLLVPMVTVIILNMASFVLGVIRIIIAGNWDSMVVQVFLSSY ILVMNSAIIEGMTIRKDKGCIPLSVIVLSTVFSIIFLCLGSFFLMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	1.41	0.9722
AT2G14830			Regulator of Vps4 activity in ...		Potri.013G135700 [exp]	1.73	0.9639
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	2.44	0.9643
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	3.16	0.9625
AT2G01620		MEE11	maternal effect embryo arrest ...		Potri.010G108600 [exp]	3.31	0.9491
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	5.47	0.9619
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.017G094800 [exp]	5.91	0.9600
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	6.00	0.9630	Pt-CHRC.3
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	7.74	0.9484
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	8.00	0.9583

Compare expression of checked genes

Potri.010G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.