Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14490 101 / 1e-23 FHA SMAD/FHA domain-containing protein (.1) AT3G02400 87 / 2e-18 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031083 [exp] 150 / 7e-42 AT4G14490 159 / 1e-45 SMAD/FHA domain-containing protein (.1) Lus10018056 [exp] 103 / 2e-24 AT3G02400 155 / 1e-43 SMAD/FHA domain-containing protein (.1) Lus10042052 [exp] 100 / 2e-23 AT3G02400 126 / 3e-33 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.010G074900.1 pacid=42797162 polypeptide=Potri.010G074900.1.p locus=Potri.010G074900 ID=Potri.010G074900.1.v4.1 annot-version=v4.1 ATGGAACCCCCAATACTGAAATTGACAATGGTGCGAGGTCCTAGAGAAGGCGAAACCCTAGAATTCAGACCCGGATCCACTGTCCGAATCGGCCGGGTTG TACGCGGCAACAACGTCCCTATAAAAGACGCCGGAATCTCCTCAAAGCACCTCGCAATCGTATCCGAACCAGGAAAATGGAGTCTCCAAGACCTTGATTC CTCCAACGGCACCACTCTCAACACCACTACTCTCTCCCCCTACAAATCCTTCGATCTCCGCGACGGCGACACCATCAAACTTGGGGAGTTAACTTCGATC CTCGTCCAATTCAACGTTCACGAGGAAACCTCGCAGTTGAGACGCAATCCGGGGAGACGTGCTAAAGAATCCAGTAAAGTAGGATCTGTCGCAGCGAATC GGAGCCGCAGAGGAAATGAAGAGGAGAGGGAGAATGCTGAAAATTTGGAGGAAGAGAATGTTGAGAAATTGGAGGTAAAAAGTGAGGTGATAGTTCCGGA GAGTAGGGGAAGAGGGAGACCAAGGAGGGCTAAGGCTTTGGAGAAGGAATTGGATAGTGTGGTTCCTGCTGAGGCAAAGAGAGTGAATTTGAGGAGTACT AGAAGTAGAAAGAACGAGGATTGTGTTGTTTTGGAGAATTTGGGAGTCGATTGTGGTGAATTGGGTAAAAAAGTGCGTGGAGGTAGGGGGAGGAAAAAGA ATTTACAGGTAGTGCCAGCGGAGAATGTTCAATGTGATGTTGTGGATGTTAAGGAGAATGTTGATTTAGCGATGAATGCACAAGAAGAGGTGAAAGAGGT TGCTAATGAGAAGAAAGTTGAGACCGTGGAAGATGTCCACAAGGAGATCACGGAAAAGGAAACGAGTTTTGGAGAAAAGTGTAATGACACAGCCAAGGGG AATGATGCTAAGGACGGTGATGTTAGTGAGGCACAAGTTAGTGCCAATGAGAATTTGGAGAAGGGGAAGGAATTACCGGATTTGGAGAAGATGACACTGG AGGAGTGGTTTAATTCTATGGAGGTGGATTTGCCAAAGCAGATATTAGAGGTCACGGAGGAGATGGTTGAAGGGATGAGAAGGAAGGCGGAGCGAGTTCG GGAGTATATGATAGAGCAGAAGAAAAAACAGGGTGTAGGGACTGTGGGCTAG
AA sequence Show only first row Show all	>Potri.010G074900.1 pacid=42797162 polypeptide=Potri.010G074900.1.p locus=Potri.010G074900 ID=Potri.010G074900.1.v4.1 annot-version=v4.1 MEPPILKLTMVRGPREGETLEFRPGSTVRIGRVVRGNNVPIKDAGISSKHLAIVSEPGKWSLQDLDSSNGTTLNTTTLSPYKSFDLRDGDTIKLGELTSI LVQFNVHEETSQLRRNPGRRAKESSKVGSVAANRSRRGNEEERENAENLEEENVEKLEVKSEVIVPESRGRGRPRRAKALEKELDSVVPAEAKRVNLRST RSRKNEDCVVLENLGVDCGELGKKVRGGRGRKKNLQVVPAENVQCDVVDVKENVDLAMNAQEEVKEVANEKKVETVEDVHKEITEKETSFGEKCNDTAKG NDAKDGDVSEAQVSANENLEKGKELPDLEKMTLEEWFNSMEVDLPKQILEVTEEMVEGMRRKAERVREYMIEQKKKQGVGTVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	0	1
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	1.00	0.9308
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	4.00	0.8844
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	4.47	0.9200
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	5.29	0.8668
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.012G044600 [exp]	7.21	0.8280
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	7.21	0.8421
AT1G49870			unknown protein		Potri.001G296700 [exp]	10.00	0.8821
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	13.30	0.9058
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Potri.009G054300 [exp]	14.42	0.8400	Pt-ORC1.1
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	19.79	0.7946

Compare expression of checked genes

Potri.010G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.