Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04300 855 / 0 TRAF-like superfamily protein (.1.2.3.4) AT5G43560 798 / 0 TRAF-like superfamily protein (.1.2) AT5G52330 453 / 2e-149 TRAF-like superfamily protein (.1.2) AT4G16045 227 / 9e-66 TRAF-like superfamily protein (.1) AT5G06600 107 / 2e-23 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 107 / 2e-23 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58210 83 / 1e-16 TRAF-like family protein (.1) AT2G42460 74 / 7e-14 TRAF-like family protein (.1.2) AT3G58250 74 / 1e-13 TRAF-like family protein (.1) AT3G58360 72 / 5e-13 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G163300 [exp] 1747 / 0 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.006G198300 [exp] 112 / 1e-24 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 111 / 1e-24 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 110 / 3e-24 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 110 / 5e-24 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.001G130700 [exp] 81 / 5e-16 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 73 / 2e-13 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.018G025600 [exp] 73 / 1e-12 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.006G256400 [exp] 72 / 3e-12 AT2G25320 2377 / 0.0 TRAF-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021218 [exp] 1185 / 0 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10021216 [exp] 1118 / 0 AT1G04300 837 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022207 [exp] 994 / 0 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022208 [exp] 677 / 0 AT1G04300 424 / 8e-134 TRAF-like superfamily protein (.1.2.3.4) Lus10008949 [exp] 110 / 4e-24 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 110 / 4e-24 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 106 / 6e-23 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 105 / 1e-22 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10025569 [exp] 98 / 3e-21 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 85 / 6e-18 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G075000.4 pacid=42797969 polypeptide=Potri.010G075000.4.p locus=Potri.010G075000 ID=Potri.010G075000.4.v4.1 annot-version=v4.1 ATGGCTGGGATTGTGGGTGAGGAAGCTGGAGTTGGAAGGTCCACGGAGGGCATTTCAAGTGGACAGCGTTGCCAGTCAGGTGAATTGCTGGCGGAATGGC GGTCCTCTGAGCAGGTGGAAAACGGAACCCCATCAACTTCGCCACCTTATTGGGACACTGACGATGACGATGATGGAGGGCCAAAACCTTCTGAGTTATT TGGAAAATACACATGGAAGATAGAGAAATTCTCACAGATTAATAAAAGAGAACTTCGAAGCAATGCATTTGAAGTTGGCGGCTACAAATGGTACATTTTA ATATATCCCCAAGGTTGTGATGTCTGCAATCATCTTTCACTATTTCTCTGTGTTGCCAACCATGACAAACTTCTTCCAGGTTGGAGTCATTTTGCACAGT TTACGATTGCTGTGGTGAATAAAGATGCAAAAAAATCTAAATATTCTGAAAAATTTGCAGATACATTACATCGGTTTTGGAAGAAAGAACATGACTGGGG ATGGAAGAAATTTATGGAGTTATCAAAAGTGTCAGATGGGTTTTTAGATGCAACTGACACTCTTATTATAAAGGCTCAAGTGCAAGTCATCAGGGAGAAA GCAGATCGGCCTTTTCGTTGCCTCGATTGCCAGTATAGGAGAGAACTTGTTAGAGTATATTTGACAAATGTAGAGCAGATTTGTCGGCGTTTTGTGGAAG AGAGACGGGGAAAACTTGGGAAGTTGTTAGAGGACAAAAATAGGTGGTCAAGCTTTTGTGCTTTTTGGTTGGGAATGGATCAAAATGCCCGGCGCCGCAT GTCCAGGGAGAAAACAGATGTAATTCTGAAAGTAGTTGTAAAGCATTTCTTTATCGAGAAGGAAGTCACATCTACATTGGTAATGGATTCCTTGTATAGC GGATTGAAGGCTCTTGAAGGCCAAACTAAGAGCAAGAAGGGAAGGGCAAAATTATTGGATGCTGAAGAAATGCCAGCTCCAATTGTTTGTGTTGAAAAAG ATATGTTTGTGTTGGTGGATGATGTGCTGCTACTACTTGAGAGGGCTGCCATGGAACCATTGCCTCCAAAAGATGAGAAGGGCCCTCAGAATCGTACAAA GGATGGAAGTTCTGGAGAGGACTTCAACAAGGATTCAATTGAGCGTGATGAAAGGCGTCTAACAGAATTGGGTCGTAGGACGGTGGAAATATTTGTCCTT GCTCATATTTTTAACCATAAAATTGAAGTTTCCTACCAGGAAGCTGTTGCTTTGAAGAGGCAAGAAGAGCTAATTCGTGAAGAAGAGGCAGCATGGCTTG CAGAAAGTGAGCAGAAGGCTAAACGTGGAGCAACTGAAAAGGAAAAGAAATTAAAGAAAAAACAGGCTAAACAAAAACGGAACAATCGCAAAGGGAAGGA TAAAGGTAGAGAGGATAGGTCTGGTGTTGCTGTGGTAGACAAGTACCAAGAGTCAAATCTTAGTAATGAGAATAAGGAGTTTGCTGTTGAGGAGGTGCGG CCTGTGATGGAAAAGCCTGAGGTTCTGGAAGATGTCTCTGATGTGTCTGATTCAGTGGATGGTGTTGCTGAAGTGCTCCAGCATGATTCAGAAGACAGAG ATGCAAGCCCGGTCAATTGGGATACTGACAGCTCAGAAGTTCATCCTCCCACCGAAGTCAGTAGCAGTGGAGTTAGTGGCTTGTCATCTGTGCCAAACGG GACAAGTGATAAAAGGAGCACATATGCAATGGATGATAGTTCCTCAACATGCTCTACTGATTCAGTCCCTTCAGTAGTAATGAATGACCCATATAAGGGA AACTCGTACTTGAACTATCAATTTGAAAAATTGCCTAGCAGAGGGAAGAATCAGCGAGGTAAGATGGCACATGATGCGAGTTGGACAGCTGAAATGGATA ATCAGCCTCCTGAGCCTGCATCAGATACTGGTGATCATAGCGATGTCACAAGAAGTAGCAAGGCTGCTGATTGCGAGCTTGAGGCTGTTGTTCATGATTT GCAGGATAGGATGGTGAAGCTTGAACAACATGTAATTAAGACAGGAAAGGAAGACGCAGTTGTTTCTATGCAAAAGCAGACGAGTAACAAAGACCTGGTT GAGGTAGAAAGACCTAAAGAAAAGACAGCAGCTGTACCATCTTCTCCCAGAAGCCCTCCGACAAGTCCTCCTAAAAATGTCCCATCCACTGTTCAATTGA AGTCAGAAAGCAAGAGTTCGGCTACCATGGATCTCAGTCAAGTTAAGAAAGCATCTTCAAATTGCTCAATGCAGGCTGATAAAGCTGCAACTTCAGCTAC CTCCCCCCAAAATGCTGGTATTCCCAAACCTGAGATCCAGAATGTGCCAACTGCAAAACAGTCTGACAAACCAACTCTAAAACAAGTGCCTGCCATGTCA AGGCCCTCCAGTGCTCCTCTGGTGCCTGGTCCCAGGCCAACTGCTGCTCCCATATCTGTAGTCCAAACAACTCCTTTACTTTCTCGTTCTGTTAGTGCAG CTGGCCGGCTGGGTCCTGACCCTTCACCAGCTACTCATAGTTATGTTCCGCAGTCCTATCGAAATGCCATTATTGGTAATGCTGTTGGTTCCAGCTCATC TGGTTTCACCCATACCAGCTCTCCAAGTACAGGAGTGAACCTATCACCAGTGCACGTGCAGCCATCTACATTGGTATCTGCACCGATGTTTTTACCACCA TTGAACTCTGATAGGGTAGACCCAAACACTCACCAATCTGGCTTTCCTTTTGGTATGGTAACTCGAGATGTCTTACAAGATGGACGCCAATGGATGGAGA GCTCTCAAAGGGATGCTAGTAGAAGCATGAGTGGTGACCCTTCTTCCCTGATAAATGGTATGCAAAACATTGACTTGTACAATCCTGTACGCAGTGGATC ACAGGTGCACTACTCCAGTGAGTTCCCAGCCTGTACATCTGGGCGTCAGACCCAAAGTGGGCTGACAGATGAGTTCCCACATCTTGATATCATCAATGAT TTGCTTGATGAGGAACATGCTGTAGGGAAGGCAGCCGAGGCAAGCAGAGTCTTCCGTAGCAATGGGCCACACCTATTGAATCGGCAGTTCTCTTTTCCAA ATGACTTGGGTGTATCAGGTGATTTGGGTTCCTCAACCAATAGCCCTTGCAGGTTCGAGCGCACCAGGAGTTACCATGATGGTGGATTTCAGCGAAGCTA TAGCTCTTCTGGAACCCATTTTGACACGCCAAGGGAATATATTCCACAAGCTAGCTCAATGCCTTATGCAAATGGGCATATTGATGGGTTGATTTCAAAC CAGTGGCAGATGGCTGGCTCTGATATTTCCTTGATGGGCATGAGAAATGCCGACGGTGATAGTTCCCCATATTTTAATCCAGAGTATTCAAATATGGCAT GCGGGGTCAATGGCTACACAGTATTTCGACCTTCAAATGGACATTGA
AA sequence Show only first row Show all	>Potri.010G075000.4 pacid=42797969 polypeptide=Potri.010G075000.4.p locus=Potri.010G075000 ID=Potri.010G075000.4.v4.1 annot-version=v4.1 MAGIVGEEAGVGRSTEGISSGQRCQSGELLAEWRSSEQVENGTPSTSPPYWDTDDDDDGGPKPSELFGKYTWKIEKFSQINKRELRSNAFEVGGYKWYIL IYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDAKKSKYSEKFADTLHRFWKKEHDWGWKKFMELSKVSDGFLDATDTLIIKAQVQVIREK ADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGKLLEDKNRWSSFCAFWLGMDQNARRRMSREKTDVILKVVVKHFFIEKEVTSTLVMDSLYS GLKALEGQTKSKKGRAKLLDAEEMPAPIVCVEKDMFVLVDDVLLLLERAAMEPLPPKDEKGPQNRTKDGSSGEDFNKDSIERDERRLTELGRRTVEIFVL AHIFNHKIEVSYQEAVALKRQEELIREEEAAWLAESEQKAKRGATEKEKKLKKKQAKQKRNNRKGKDKGREDRSGVAVVDKYQESNLSNENKEFAVEEVR PVMEKPEVLEDVSDVSDSVDGVAEVLQHDSEDRDASPVNWDTDSSEVHPPTEVSSSGVSGLSSVPNGTSDKRSTYAMDDSSSTCSTDSVPSVVMNDPYKG NSYLNYQFEKLPSRGKNQRGKMAHDASWTAEMDNQPPEPASDTGDHSDVTRSSKAADCELEAVVHDLQDRMVKLEQHVIKTGKEDAVVSMQKQTSNKDLV EVERPKEKTAAVPSSPRSPPTSPPKNVPSTVQLKSESKSSATMDLSQVKKASSNCSMQADKAATSATSPQNAGIPKPEIQNVPTAKQSDKPTLKQVPAMS RPSSAPLVPGPRPTAAPISVVQTTPLLSRSVSAAGRLGPDPSPATHSYVPQSYRNAIIGNAVGSSSSGFTHTSSPSTGVNLSPVHVQPSTLVSAPMFLPP LNSDRVDPNTHQSGFPFGMVTRDVLQDGRQWMESSQRDASRSMSGDPSSLINGMQNIDLYNPVRSGSQVHYSSEFPACTSGRQTQSGLTDEFPHLDIIND LLDEEHAVGKAAEASRVFRSNGPHLLNRQFSFPNDLGVSGDLGSSTNSPCRFERTRSYHDGGFQRSYSSSGTHFDTPREYIPQASSMPYANGHIDGLISN QWQMAGSDISLMGMRNADGDSSPYFNPEYSNMACGVNGYTVFRPSNGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	0	1
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	1.00	0.9031
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	4.47	0.8875
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	4.89	0.8688
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	5.00	0.8127
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	7.34	0.8445
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	7.48	0.8471
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	7.54	0.8838
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	9.89	0.8495
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	12.64	0.8246
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.002G140200 [exp]	15.65	0.8045

Compare expression of checked genes

Potri.010G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.