Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23100 310 / 7e-107 XRCC4 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2) AT1G61410 112 / 2e-31 DNA double-strand break repair and VJ recombination XRCC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022210 [exp] 328 / 5e-114 AT3G23100 295 / 7e-101 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2) Lus10021220 [exp] 320 / 8e-111 AT3G23100 296 / 3e-101 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06632 [poplar] [flax] XRCC4 DNA double-strand break repair and V(D)J recombination protein XRCC4
Representative CDS sequence Show only first row Show all	>Potri.010G075900.1 pacid=42799352 polypeptide=Potri.010G075900.1.p locus=Potri.010G075900 ID=Potri.010G075900.1.v4.1 annot-version=v4.1 ATGGAGTCGACAATGGCCAGGCATACATGCCTGAAGCTTGAAATCCCCGAACCAATCTTCATAAAAGGCACTTGGTTTCCCTTTCACTTCAATCTCTCCA TCACCGACGGCCTTAATTCCTGGTTCTGTAACGCAACGGAAGAGGAGGTGAGAGATAGAGCAGCACAATGGGACCAACCTGTGTCTACCTACATTCAATT GGCCGAGAAACATTTAGGGTTTCAAATTCCCGGTTCTGTTTACAAATTTACTGATGCTGGAGAGGGGAATAAACGATTGTCGTGGACTTTTGAGAAAGAA GGGACAAAGCTAGAATGGCGATGGAAATGCCAGCCCTCGCCTGATACTAAGAAGACTACTACTTTAATCTTGGATTTTCTTATGGATGCTAACATCAGAC TAAGTGAAGAAGTTGTCAGAAAGACTCAGTCGTTTGAACAACTGAAAGGAGAAGCTGAGAAGTGTTTGGCACAAAGTGAGAAATTTAACAGTCAGAAGAT GGAATTTGAAGCTGCAGTATATGCAAAGTTTCTTGGGGTCTTAAATTCAAAGAAACGGAAACTTAGAGAACTTCGAGATCAGCTCTCGAAGAAAGAAATT TCTGGAGAATCGGCACAGGAAGAGGAAGATTCTGACAAAACTGAGAGTTTTGATAGAGGTAGTGATGACGAGAAAAGTGTGGAAAAACCTCGGGAGAAAC TTGCAGGCACTTCTAAGGATCCACCTCCTCGCAGGGGTTATGTTAGGAAGAAGATAACCCACAAGTAG
AA sequence Show only first row Show all	>Potri.010G075900.1 pacid=42799352 polypeptide=Potri.010G075900.1.p locus=Potri.010G075900 ID=Potri.010G075900.1.v4.1 annot-version=v4.1 MESTMARHTCLKLEIPEPIFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRDRAAQWDQPVSTYIQLAEKHLGFQIPGSVYKFTDAGEGNKRLSWTFEKE GTKLEWRWKCQPSPDTKKTTTLILDFLMDANIRLSEEVVRKTQSFEQLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNSKKRKLRELRDQLSKKEI SGESAQEEEDSDKTESFDRGSDDEKSVEKPREKLAGTSKDPPPRRGYVRKKITHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Potri.010G075900 [exp]	0	1
					Potri.012G082300 [exp]	3.00	0.8720
AT1G45170			unknown protein		Potri.002G262700 [exp]	8.71	0.8702
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	12.12	0.8659
					Potri.004G212550 [exp]	14.83	0.8613
AT1G61620			phosphoinositide binding (.1)		Potri.004G026800 [exp]	15.87	0.8383
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	17.14	0.8549
AT1G10690			unknown protein		Potri.010G045200 [exp]	22.22	0.8434
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	23.81	0.8548	MYB165
AT2G02590			unknown protein		Potri.010G034400 [exp]	25.92	0.8531
AT5G48220			Aldolase-type TIM barrel famil...		Potri.014G169100 [exp]	26.98	0.8136

Compare expression of checked genes

Potri.010G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.