Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 72 / 9e-14 unknown protein AT3G11290 52 / 5e-07 unknown protein AT2G24960 51 / 1e-06 unknown protein AT4G02210 50 / 2e-06 unknown protein AT3G11310 44 / 9e-05 unknown protein AT2G19220 42 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116400 [exp] 216 / 4e-68 AT5G05800 97 / 3e-22 unknown protein Potri.008G074066 [exp] 215 / 1e-67 AT5G05800 92 / 1e-20 unknown protein Potri.014G061450 [exp] 204 / 2e-63 AT5G05800 111 / 2e-27 unknown protein Potri.010G190650 [exp] 198 / 3e-61 AT5G05800 104 / 6e-25 unknown protein Potri.003G192350 [exp] 194 / 3e-59 AT5G05800 100 / 4e-23 unknown protein Potri.004G230401 [exp] 194 / 4e-59 AT5G05800 100 / 4e-23 unknown protein Potri.001G370432 [exp] 191 / 1e-58 AT5G05800 95 / 6e-22 unknown protein Potri.005G135800 [exp] 193 / 2e-58 AT5G05800 100 / 3e-23 unknown protein Potri.010G132850 [exp] 191 / 3e-58 AT5G05800 100 / 1e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026250 [exp] 58 / 6e-09 AT2G24960 750 / 0.0 unknown protein Lus10025958 [exp] 55 / 4e-08 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 55 / 7e-08 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013421 [exp] 43 / 0.0003 AT4G02210 418 / 1e-144 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G076000.2 pacid=42798263 polypeptide=Potri.010G076000.2.p locus=Potri.010G076000 ID=Potri.010G076000.2.v4.1 annot-version=v4.1 ATGGGAAAGAGTAAGGAAGTTAAAACAGTCTATGAAACTGAGAATAATTTAGCCATGGATGTATTGGATCGAGGAATTGAAACTGAATGTAAAGCAGTTA AGGCTGTGTGGAGTAGAAGGAGTACACATATATTTTTTGATATTTGTATCCAAGCTGTTCAGATGGGCTTGCGACCTGGGACTCATTTCTCTAAACATGG ATGGAGGTATGTTATTGGACAATTTGAGAAAGAGAGTGGACAAAGTTTTACCAAGAAGCAGTTGAAAAACAAGTGGGATGGGATAAAGAAGGACTGGAAG ATTTGGAAATCTTTGCTAGGTCAAGAAAACGAACTTGGTTGGGATCCCAATAAACAAACAGTTGCTGCCTCTGATGATTGGTGGGATGAAAAGATCAAGG CTATGCCAGCAGCTGAAAAATTCCGAAATTCAGGTATTGAGCCTGATCTTTGTTCAAAATATGATTTCATGTTCACTGGATCAAGTGCTTGGCCCACCTC TTCAGCTGTTTTTATGGACGAGGAGGAAAATGATGGCAATCTCATGCAACCTAATGTTAATATTGGACCAGCTGTGCATGTGGAAGGGAGTGGTGATTTA GGGGATGAGCCTACTTTTGTGGAGAGTTTGGACGAGATGTTGACTGCTGCATGTGTAGACCGGGACTCCCTCCAGATTGAGGAGCAGGGAAATGACAAGA AACAAAAGAGAGTTGATGAATCTGGCACACAATCAGTCAAGAAAGGAAGGAATCAATCAGGAGGCACAGTGAAGCTATCCCGCAAACTTGACAGGTTGAT GGCTACTGTTGAGAGTGGGGGTAGTGTCACTTCGAGGAGGAGAGATGCTCAAGGATGTAGCATTATAGAAGTCATGGATGAATTGCATTCTATGCCAGAC ATTGTGAAAGGCAGCGGCCTTCATGTATTTGCTTCAGAGTTTTTCCTATTAAGGACTAGAAGAGAGATGTGGTTTGCAATGAGAGAACCAAAAGCCAAAA TAAATTGGCTAAAGACTATGTATGATAAATCTGTAGCAAATCAGTAG
AA sequence Show only first row Show all	>Potri.010G076000.2 pacid=42798263 polypeptide=Potri.010G076000.2.p locus=Potri.010G076000 ID=Potri.010G076000.2.v4.1 annot-version=v4.1 MGKSKEVKTVYETENNLAMDVLDRGIETECKAVKAVWSRRSTHIFFDICIQAVQMGLRPGTHFSKHGWRYVIGQFEKESGQSFTKKQLKNKWDGIKKDWK IWKSLLGQENELGWDPNKQTVAASDDWWDEKIKAMPAAEKFRNSGIEPDLCSKYDFMFTGSSAWPTSSAVFMDEEENDGNLMQPNVNIGPAVHVEGSGDL GDEPTFVESLDEMLTAACVDRDSLQIEEQGNDKKQKRVDESGTQSVKKGRNQSGGTVKLSRKLDRLMATVESGGSVTSRRRDAQGCSIIEVMDELHSMPD IVKGSGLHVFASEFFLLRTRREMWFAMREPKAKINWLKTMYDKSVANQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.010G076000 [exp]	0	1
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	2.00	0.8197
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	13.85	0.7658
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	16.30	0.7825
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	17.37	0.7948
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	19.23	0.7858
AT5G50990			Tetratricopeptide repeat (TPR)...		Potri.012G109300 [exp]	19.44	0.7450
AT1G75400			RING/U-box superfamily protein...		Potri.002G031600 [exp]	21.00	0.7513
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.014G118100 [exp]	21.44	0.7883
AT1G80810			Tudor/PWWP/MBT superfamily pro...		Potri.003G181300 [exp]	22.24	0.6997
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.018G033300 [exp]	25.29	0.7516

Compare expression of checked genes

Potri.010G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.