Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 112 / 2e-28 WDL1 WVD2-like 1 (.1.2.3) AT1G54460 105 / 2e-25 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 93 / 5e-22 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G25480 86 / 4e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 84 / 2e-17 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G35880 84 / 2e-17 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 75 / 2e-14 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162800 [exp] 550 / 0 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.013G042800 [exp] 164 / 1e-46 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.005G055900 [exp] 151 / 4e-42 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 95 / 5e-21 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 88 / 6e-19 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 89 / 7e-19 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.016G066600 [exp] 86 / 8e-18 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 69 / 2e-12 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 63 / 2e-10 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021223 [exp] 273 / 6e-89 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 261 / 1e-83 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10042543 [exp] 96 / 3e-22 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 96 / 4e-22 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 94 / 2e-21 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10005533 [exp] 93 / 5e-21 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 94 / 8e-21 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10000016 [exp] 79 / 7e-17 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029355 [exp] 80 / 5e-16 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 78 / 2e-15 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.010G076200.4 pacid=42798090 polypeptide=Potri.010G076200.4.p locus=Potri.010G076200 ID=Potri.010G076200.4.v4.1 annot-version=v4.1 ATGGGCATAGAAGTTACTGACGTCTGCATGGACAAGGAGCCAAATTGTGTCATCGTTTATTCAAATGGTGTCTCCCATGATCCAACTCATGAAACTGTTC CTGACGACCATGGTGTTCTGGAATCCTATGAACCTATCAATGGTGTTCCAGAGCTCCATAGCTCAGAGGAGAGTACTGAAGCGAAGGAATATGTGGTGAA GGAATGTACCACTGAAGTCTCAGTTGAGGTTACTGAACTTTCCCATGCTGAAAAAAGCAAGGAAGATCAGACTGTAGTATGCTCAAATTTTGAGGATGGC TTGAAAGTGGAAAAGGTCAAAGCACTAAACCGGAAATCTAAGGATATCGGTCAGAAAAAATCGTCTACAAAGCATGCATCAAAACCTGCTCCTGCTGGAC TTGCTCGAACAAAACACACTGTTCCGCAGCCATTTGCCTTAGCAACTGAAAAGCGTGCTTCATTGGGAATGCGTCCTTCTGGCGAACCTGATATCACCAA TGGTCTAAACAAATCATTCAAGGCAAACAATGCGCTACGTCCAAACCCTATAAAGCAGAATCAGCCACTTTCTGTGTCAAGGAAGCCATTGCAACCAAAT AATAAGAAGCATCCAGATGAGGAAGATAATTGTTCTGTCACTTCCTCTACCACAGCATCTGCACGGCCTGCTAAGTCCAAGCCAGCTGCTGTGGCAGCCC CTGTATTTAGATGCAATGAACGTGCTGAAAAGCGGAAGGAGTTCTATTCAAAGTTAGAGGAAAAACATCTAGCATTGGAGGCTGAGAAAACCCAAAGTGA AGCAAGGACCAAGGAAGAGAAGGAGGCAGCCATCAAGCAACTGAGGAAGAGTTTGATGTTTAAGGCTAGCCCAATGCCAAGTTTCTACCATGAAGGACCA CCGCCTAAGGTTGAACTAAAAAAGCTGCCACCAACACGTGCAAAATCACCAAAATTGGGCCGAAGGAAGAGCTGCAGTAATGGAGTGAATTCATCTCAGC CAGACAGAGTGAAAGGAGCTTGTGGTGATGGAAATAACCAAAGTCAGGGTATTTTCAGAGAAGATACCAGCAACCCTGTTTCTCAGCACAGTATCCCGAA AGGCCATGTCATTTGCAAATTTGAAGATGAAACTAGGCAAATGGAAGGGATAGATGAGTTGATTCCACTTGAGGTAAGTGGACAGAGTTTTGCAGGCATT GGCCTTCAGTCTTAA
AA sequence Show only first row Show all	>Potri.010G076200.4 pacid=42798090 polypeptide=Potri.010G076200.4.p locus=Potri.010G076200 ID=Potri.010G076200.4.v4.1 annot-version=v4.1 MGIEVTDVCMDKEPNCVIVYSNGVSHDPTHETVPDDHGVLESYEPINGVPELHSSEESTEAKEYVVKECTTEVSVEVTELSHAEKSKEDQTVVCSNFEDG LKVEKVKALNRKSKDIGQKKSSTKHASKPAPAGLARTKHTVPQPFALATEKRASLGMRPSGEPDITNGLNKSFKANNALRPNPIKQNQPLSVSRKPLQPN NKKHPDEEDNCSVTSSTTASARPAKSKPAAVAAPVFRCNERAEKRKEFYSKLEEKHLALEAEKTQSEARTKEEKEAAIKQLRKSLMFKASPMPSFYHEGP PPKVELKKLPPTRAKSPKLGRRKSCSNGVNSSQPDRVKGACGDGNNQSQGIFREDTSNPVSQHSIPKGHVICKFEDETRQMEGIDELIPLEVSGQSFAGI GLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	0	1
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	1.00	0.9675
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	1.41	0.9611
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	2.82	0.9523
AT3G42950			Pectin lyase-like superfamily ...		Potri.006G139500 [exp]	3.00	0.9490
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.008G116400 [exp]	4.12	0.9377
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	4.24	0.9548
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	5.29	0.9494
AT2G41610			unknown protein		Potri.014G108300 [exp]	5.47	0.9500
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	6.92	0.9434	C4H2,CYP73.2
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	7.07	0.9511

Compare expression of checked genes

Potri.010G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.