Plant FIBer expression Database

Potri.010G076425 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G076425.1 pacid=42798340 polypeptide=Potri.010G076425.1.p locus=Potri.010G076425 ID=Potri.010G076425.1.v4.1 annot-version=v4.1
ATGAGATCACGATATCTTCTTTGCAAGTATTTTGAAGCCATGGCAGAGAAGAGTATCATTTTCGTACTCATATTTTCATTACATATATATGGTCGTCCGG
TATCAGAATCTGGCAAAATTAACAGGCCATCTTCGGTGGAGGAAAATGTATACAAATCCATTCCAGAAATGATCCATGGCTGTTATGAAGTTATGCTTGA
CAGTCTGGCTACACTTGTTGCTGGCAGCATTAGATTTTGGGAAAATTCTTCAATACAAGATTATTATACAAATCAACACCCAGACAAATTAATCTGGGTT
TCCCTTTCATGGGATCTTGAAACAACCCAGGATTCATCCGTTACAGTATCGTAA
AA sequence
>Potri.010G076425.1 pacid=42798340 polypeptide=Potri.010G076425.1.p locus=Potri.010G076425 ID=Potri.010G076425.1.v4.1 annot-version=v4.1
MRSRYLLCKYFEAMAEKSIIFVLIFSLHIYGRPVSESGKINRPSSVEENVYKSIPEMIHGCYEVMLDSLATLVAGSIRFWENSSIQDYYTNQHPDKLIWV
SLSWDLETTQDSSVTVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G076425
[exp]
0 1
AT3G30340 nodulin MtN21 /EamA-like trans... Potri.001G453000
[exp]
2.23 0.9230
AT2G41550 Rho termination factor (.1) Potri.016G043300
[exp]
2.44 0.8894
AT5G66600 Protein of unknown function, D... Potri.004G150000
[exp]
4.89 0.8964
AT3G50660 PSC1, CYP90B1, ... SUPPRESSOR OF NPH4 2, SHADE AV... Potri.014G171700
[exp]
5.91 0.8888
AT5G45530 Protein of unknown function (D... Potri.015G113500
[exp]
10.09 0.8457
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.012G090400
[exp]
10.86 0.9042
AT3G50120 Plant protein of unknown funct... Potri.006G042500
[exp]
12.24 0.8975
AT2G25600 AKT6, SPIK Shaker pollen inward K+ channe... Potri.018G031600
[exp]
16.12 0.8921
AT3G50780 unknown protein Potri.005G129700
[exp]
16.12 0.8677
AT2G41990 unknown protein Potri.009G140600
[exp]
16.43 0.8361

Potri.010G076425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.