Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17350 318 / 2e-111 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) AT1G72420 304 / 1e-105 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1) AT4G18810 50 / 5e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061200 [exp] 48 / 2e-06 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029985 [exp] 308 / 3e-107 AT1G17350 336 / 1e-118 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10035323 [exp] 207 / 3e-68 AT1G17350 235 / 2e-79 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10027384 [exp] 44 / 2e-06 AT1G17350 51 / 1e-09 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10007308 [exp] 47 / 8e-06 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10029255 [exp] 45 / 2e-05 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF08547 [poplar] [flax] CIA30 Complex I intermediate-associated protein 30 (CIA30)
Representative CDS sequence Show only first row Show all	>Potri.010G076600.7 pacid=42797519 polypeptide=Potri.010G076600.7.p locus=Potri.010G076600 ID=Potri.010G076600.7.v4.1 annot-version=v4.1 ATGTCCAGGTTTAGATCACTCTGGCAAGCTTCTTTGGATGCTACCAAGAAAGCTCTCACATGGAATGTGGAAGACTTGATGCCTCCAACTGAGAGGCTCA TTTTTAATTTCAATTCTAGGGAAGAGCTAAAGAAGTGGCATCTTTATTCTGATTCTGAGTACGGAGGTTCGTCCTCAGCGTCGTTGGAGTTCATGGATGA GGGAAATGGACTAAAAGGAGTCTTCTCTGGTAACCTGTCATTGGATGTAGCTGAGGGTTCAAAGTGGAATATTAGTCGGAGTGGTTTCTGTGGAATGCGG TCCAAGAAGTTTGATGGTTTCATTGATCTAGACGCATATGATACAATAGCTCTAAAGCTTAAAGGTGATGGAAGAAGCTACATATCCACAATTTATACTG AGAATTGGGTGAATTCACCCGGACAAATGGAAGATAATTCATGGCAAGCTTTTGTTTTTGTACCCAAAGACAACTGGTATATTGCAAGGATACCTCTCGC TCGATATTTGCCAACATGGAGAGGAAACGTTATAGATGCAAGCATGGAAATGAATCAATCGCGCATTCTCGGCATGTCTCTATCCGTCAATGCAGGTGGT GGGATCCCCGGTGCTAGATCCGGACCAGGTGATTTCAAAGTTGAACTTGATTGGATAAAAGCCTTTAGGACACAGTGA
AA sequence Show only first row Show all	>Potri.010G076600.7 pacid=42797519 polypeptide=Potri.010G076600.7.p locus=Potri.010G076600 ID=Potri.010G076600.7.v4.1 annot-version=v4.1 MSRFRSLWQASLDATKKALTWNVEDLMPPTERLIFNFNSREELKKWHLYSDSEYGGSSSASLEFMDEGNGLKGVFSGNLSLDVAEGSKWNISRSGFCGMR SKKFDGFIDLDAYDTIALKLKGDGRSYISTIYTENWVNSPGQMEDNSWQAFVFVPKDNWYIARIPLARYLPTWRGNVIDASMEMNQSRILGMSLSVNAGG GIPGARSGPGDFKVELDWIKAFRTQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17350			NADH:ubiquinone oxidoreductase...		Potri.010G076600 [exp]	0	1
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G136600 [exp]	5.65	0.7805
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.016G142700 [exp]	5.91	0.8524
AT4G38495			unknown protein		Potri.016G127200 [exp]	10.19	0.8100
AT2G20410			RNA-binding ASCH domain protei...		Potri.013G045800 [exp]	24.67	0.7981
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Potri.016G100100 [exp]	25.25	0.7625
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220150 [exp]	31.30	0.8130
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Potri.011G141200 [exp]	33.91	0.8046
AT4G21105			cytochrome-c oxidases;electron...		Potri.011G156400 [exp]	35.91	0.8113
AT3G17080			Plant self-incompatibility pro...		Potri.015G130300 [exp]	42.66	0.7881
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089100 [exp]	44.09	0.8064	APC2.2

Compare expression of checked genes

Potri.010G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.