Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43630 234 / 2e-64 TZP zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162500 [exp] 1344 / 0 AT5G43630 237 / 3e-65 zinc knuckle (CCHC-type) family protein (.1) Potri.008G162150 [exp] 955 / 0 AT5G43630 191 / 1e-50 zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021224 [exp] 568 / 0 AT5G43630 342 / 1e-103 zinc knuckle (CCHC-type) family protein (.1) Lus10022216 [exp] 373 / 5e-117 AT5G43630 234 / 3e-67 zinc knuckle (CCHC-type) family protein (.1) Lus10022215 [exp] 95 / 5e-21 AT5G43630 42 / 4e-04 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03126 [poplar] [flax] Plus-3 Plus-3 domain
Representative CDS sequence Show only first row Show all	>Potri.010G076700.10 pacid=42797213 polypeptide=Potri.010G076700.10.p locus=Potri.010G076700 ID=Potri.010G076700.10.v4.1 annot-version=v4.1 ATGAATGCAGATGATAAAAACATAGAACCTGTGACTGATCAGTGCTTTCAGAGAAGAGTGAAGAATGATTCAGGTGCAGGTGCAAATGCAGGCTCAAGTG TAGACAAGACATTTGCGGCCACCAATGCCCTGTCTGAACTAGTTTGGTCTCCACAGAAAGGTTTGTGTCTTAAATGCGCTGATGGAAGCTTCTCCTACAA AAATCCCTCTCTGTTATGGGGTGCAGGCCCAAGTAATATGGTAAGTGGATCAAGTACTGACAAACCTATCAGTAAAGAATATTTCTGGACAGCTCTAGGT GCATCTGATGTGAACAGTGAAGTTGCTGGAAGAGACAATTCCACTAAATTTGTTACCAGTGATACAAGCATGTTTCCGTCAAGTGAATCTAGACATGAAA TCAAAATAGCTGGACCGAACCTGGATGTGGCAAAGAATGATCCGACTTCCGAGGAACCTATTGTCAGAATTAGAGATGTTGGTGACGGGATTCACACATT ACAGACAGAAAATGTTTCGGCCTCACAACTTTGCTCAGTGAAAGAATGTGAATCTTATGACATTAAAATGCAAGCACCATCCTCAGGAAGAGAAAATTTT GAATCACCTTCATGCATGGAAAAGGAGAGAGAAAATAAGGTGGAGACTGGTCCCTACATCTGTCCTCTGGAAAAACTGGAGTCAACTGCAGAGAATGATA TAAGAACTCCACATGGTGAAAATGTCTATGATGCGGCAACTAAGATTGTAGGATCAGCATCTGCCCAAGAAGTCCAAAATAGCTCTCAGCAGGGTGATGT GCTTTCTAGAGACAATAATCGTGGGATTAAACAGTCTCCCACAAACAGCAGAACCCAGAGGTATCAGATGAAAGGCAAGGCCAAGTTTCCCACAAACAGC AGAACCCAAGGGTATCAGATGACAGGCAGGGATAAGGCTTTATCTTATGGAGATCTAGATGAAAGAGTGCATATGGAGGATGACAGTCATGAAAGTGTTG AAAGTTGCAACAGTGCTGGGTTATTTTCATCTGGCAAAAAGCGATGGAACCTTGATCCACAGTTGTGTGCTGGGAGCAAAAGTGTCAAAACAAAAATTCA TAAAAGTCCCGGCTCCTCTTCATTTGTTAAACAAGATAGTTCATTCATGAATTGGATCTCAAACATGATGAAGAGGTCCGGAAAATCAAAAGAAGATAAG GCACCTTCACTTGCACTTACCCTTGCTAATCATAATCATGGACATGAGAATCCTGACAAGAATCTCGTTTCATGTAATAGAAACCAGGATAAAGGGTGCA AAACTACGGGGTTTCATTCTATTTTTCAGTCATTGTATTGTCCAAAGACAAAGACTCAAGAAATTGTCTCTTCGCACGCCAATAATCAAGCCGAAGAATC TAAAGAACTTGAGCTGGACAACAAGATCTGTGACACTAATGCTACTCCATTATCCTGTCGTATGGTAACTGGCAATGTGTACAAACGGTTTCTTCAATCA AATGACAAGTTAAATGAGTCGACATCTGGCAATGGTGCAGCTCCAGCGGCCCTGACCCAACTTTTTTCCACCGGTACTGCTTCTGCTCAGGTGATCAACA GGAACAACTATGCAGAGAACAGAAATTTATACAACTTAGCAACTGATAAGGAGAAAAACGGGACAAGCTCCAATTCCTCTCTGTGTAAACGTGAGAGAAA CAGTGCCAAGAACATAGATACTGAACTGCCATCTGAAGGCAAGCCTGCTAACAATTCTAGGTACAAAAGTGACCCACTCACAAGCTTGTGGATCACTCGG TTTACTCCAAAAAATTCTGGTCCCTTGTCAAACACGGATTCTTGCAACAGAAGTGCTGGAGAAGCTCTTGACAGCTCCACTGATAGCAGGAGGCTGAATG CTCAATGGCAGAACAATCATACTTCTTTCCATCATAAAATTGTGATGGCTAGGGAGGAGGAGCACTCCAATGAGGACCCGGTATACATGCAAAATTGTGC TACGAGTACTGAAGTTTCATTTGGCATAAATAAGGTAAATGGACAAGATGATGAGAAGTCCATATGTAAACTGAATCCTATCTTGCCTTTTTCAAGATTC AGAAATTCAGAGGCCATGGCTTCTGTCTTTGCAAGGAGATTGGATGCCCTCAAGCACATCATGCCGTCGTATGATACGGATGATTCTGTTCATGGAAACC TGGCATGTTTCTTTTGTGGCATAAAAGGTCACCATGTGCGAGATTGTCCAGAGATACCAGATAGTGAGCTTGAAGGTCTTCTAAGAAATGTTAATTTGTA TAACGGAGCAAAAGAATTGCCTTGTGTGTGCATAAGATGTTTCCAGTCAAATCATTGGGCTTTTGCATGTCCCAATGCCTCTTCAAGCACAAGATATCAA GCAGAATATGGCGCTTCTTTTGTCCATGAATGCAGCCCCGGTAAAATTCTGCTTAATCCAAGAAATGAAGACGATGCAAAGCAGTCAGATGGCAAGTATG GTCAATTGCCAACTGCTGATGCGCCTACAGTTTGCAATGAGAAATTGAATGAAGCTGTTTCCTCTGGGAAAATGAATTTGAATATGAAACTGTTTGGAAA AGACACTGTTTTCCAAACAGTTTCGAGCTCTGGGAAAAAGAAGTTGAAAGAAAACCAGGCCATGCCTTTGAGTAATTTTGTTGATAGCCAGATATCAGAC GGACCCAAGGGAATTTTTGATGCAGTGAAAATGCTTCGTTTATCTCGAGCAGTTATTCTCAAATTGATGGATTCTCACGCGGCACCCTCACGACTTGATG GCTTTTTTCTGCGCTTGCGACTTGGGAAGTGGGAACAGGGACTAGGGGGAACTGGATATTATGTAGCCTGCATAACTGGGGTTGAGAGTGAGAGTTCAAC ACAGAAGTCCAAAAATTCTATTGCTGTCAATGTAGGTGGGATCAAATATTTGGTTGAGAGTCAATGCATCTCCAACCACGATTTCACTGAGGATGAGCTA ATGGCATGGTGGCGGGCAACATTGAAGGGTGGTGGCAACATACCTTCTGAAGAAGATTTGAGAATGAAAGCTAAAGAGATGAAAATGTTAGGAGTTTAG
AA sequence Show only first row Show all	>Potri.010G076700.10 pacid=42797213 polypeptide=Potri.010G076700.10.p locus=Potri.010G076700 ID=Potri.010G076700.10.v4.1 annot-version=v4.1 MNADDKNIEPVTDQCFQRRVKNDSGAGANAGSSVDKTFAATNALSELVWSPQKGLCLKCADGSFSYKNPSLLWGAGPSNMVSGSSTDKPISKEYFWTALG ASDVNSEVAGRDNSTKFVTSDTSMFPSSESRHEIKIAGPNLDVAKNDPTSEEPIVRIRDVGDGIHTLQTENVSASQLCSVKECESYDIKMQAPSSGRENF ESPSCMEKERENKVETGPYICPLEKLESTAENDIRTPHGENVYDAATKIVGSASAQEVQNSSQQGDVLSRDNNRGIKQSPTNSRTQRYQMKGKAKFPTNS RTQGYQMTGRDKALSYGDLDERVHMEDDSHESVESCNSAGLFSSGKKRWNLDPQLCAGSKSVKTKIHKSPGSSSFVKQDSSFMNWISNMMKRSGKSKEDK APSLALTLANHNHGHENPDKNLVSCNRNQDKGCKTTGFHSIFQSLYCPKTKTQEIVSSHANNQAEESKELELDNKICDTNATPLSCRMVTGNVYKRFLQS NDKLNESTSGNGAAPAALTQLFSTGTASAQVINRNNYAENRNLYNLATDKEKNGTSSNSSLCKRERNSAKNIDTELPSEGKPANNSRYKSDPLTSLWITR FTPKNSGPLSNTDSCNRSAGEALDSSTDSRRLNAQWQNNHTSFHHKIVMAREEEHSNEDPVYMQNCATSTEVSFGINKVNGQDDEKSICKLNPILPFSRF RNSEAMASVFARRLDALKHIMPSYDTDDSVHGNLACFFCGIKGHHVRDCPEIPDSELEGLLRNVNLYNGAKELPCVCIRCFQSNHWAFACPNASSSTRYQ AEYGASFVHECSPGKILLNPRNEDDAKQSDGKYGQLPTADAPTVCNEKLNEAVSSGKMNLNMKLFGKDTVFQTVSSSGKKKLKENQAMPLSNFVDSQISD GPKGIFDAVKMLRLSRAVILKLMDSHAAPSRLDGFFLRLRLGKWEQGLGGTGYYVACITGVESESSTQKSKNSIAVNVGGIKYLVESQCISNHDFTEDEL MAWWRATLKGGGNIPSEEDLRMKAKEMKMLGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	0	1
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	2.44	0.9024
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	4.00	0.8778	Pt-COL1.1
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	10.09	0.8113
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	10.39	0.8285
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030451 [exp]	10.95	0.8027
AT5G42810		ATIPK1	inositol-pentakisphosphate 2-k...		Potri.002G032900 [exp]	12.04	0.7766
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	14.38	0.8677
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	18.38	0.8287
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	19.97	0.8362
AT5G22390			Protein of unknown function (D...		Potri.009G162800 [exp]	22.95	0.8393

Compare expression of checked genes

Potri.010G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.