Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43650 117 / 3e-32 bHLH BHLH92, bHLH092 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G56960 49 / 6e-07 bHLH bHLH041 basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161800 [exp] 271 / 1e-92 AT5G43650 124 / 9e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 41 / 0.0004 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022218 [exp] 87 / 2e-19 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10008804 [exp] 80 / 1e-18 AT5G43650 94 / 1e-23 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G077000.4 pacid=42799913 polypeptide=Potri.010G077000.4.p locus=Potri.010G077000 ID=Potri.010G077000.4.v4.1 annot-version=v4.1 ATGGATGGTTTCTTTCAAGACGAGTGGCAAGGTGATGGCTTCTGGAATGAGATTGGTCCAGTGAATCAAGGTGCTTTTGTGCCGTATATACGCAGAGCTG GGGCTGGAAGTGAGAGCTCTTCTATGGGGGCACATCCTACTAACATGAACAAAAGAATGGTAGAATTCATGAGGAGAAGTTTTCCAGTAAATATTGGAGC TCAAGAGCCTGGTAGCGAACGCTGTAATCGTCATATGATGAGTGAGAGATTGAGGAGAGAGAGGGAGAGGCATGGTTACTTGGCTCTGCATTCTTTGTTG CCACTTGGCACCAAGAAGGATAAGAACTCGATTATGCAGATGGCAGCAAAGAGAATTCAAGAGCTGGAGACATACAAGAGGATTTTGGAGAGGAGAAATG GTGAAATTGAAGAGAAACTGGCAGGAAGTGGAATTGTAAATGTGGAGAGTACAAAGATTAGAATTGAAGTGGCCAATCCAACATCTGGGGTGGATCCTAT GGTAGACGTTCTCAAGTGCTTGAAGAGCTTGGGAGCAAAAACCAGAAGCATTCAATCTCAGATTTCTGATCAGCAACTTGTAGCGGTAATGGACATTGAA ACTGAGATTGAAGCTGCTGAGATAGAAAACGCCGTGAAACGAACACTGGCAAGATATTGA
AA sequence Show only first row Show all	>Potri.010G077000.4 pacid=42799913 polypeptide=Potri.010G077000.4.p locus=Potri.010G077000 ID=Potri.010G077000.4.v4.1 annot-version=v4.1 MDGFFQDEWQGDGFWNEIGPVNQGAFVPYIRRAGAGSESSSMGAHPTNMNKRMVEFMRRSFPVNIGAQEPGSERCNRHMMSERLRRERERHGYLALHSLL PLGTKKDKNSIMQMAAKRIQELETYKRILERRNGEIEEKLAGSGIVNVESTKIRIEVANPTSGVDPMVDVLKCLKSLGAKTRSIQSQISDQQLVAVMDIE TEIEAAEIENAVKRTLARY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	1.73	0.9884
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046600 [exp]	2.00	0.9875
AT1G53903			Protein of unknown function (D...		Potri.001G163400 [exp]	2.44	0.9855
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	3.87	0.9760	ERF7
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	5.65	0.9808
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	7.74	0.9558
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.009G080600 [exp]	8.36	0.9645
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.002G150600 [exp]	8.48	0.9627
AT5G37490			ARM repeat superfamily protein...		Potri.015G031000 [exp]	8.48	0.9680
					Potri.016G134100 [exp]	8.94	0.9472

Compare expression of checked genes

Potri.010G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.