Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23070 927 / 0 ATCFM3A CRM family member 3A (.1) AT4G14510 875 / 0 ATCFM3B CRM family member 3B (.1) AT4G29750 570 / 0 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 512 / 8e-169 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 504 / 7e-164 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G16180 321 / 3e-97 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G25440 112 / 3e-26 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 98 / 1e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 97 / 2e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 84 / 2e-16 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056100 [exp] 500 / 2e-164 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 492 / 8e-159 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.017G116700 [exp] 398 / 1e-125 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 278 / 2e-86 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G176900 [exp] 112 / 5e-26 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.007G129600 [exp] 95 / 3e-20 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.013G083000 [exp] 94 / 3e-20 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 84 / 2e-16 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G423800 [exp] 65 / 7e-11 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001187 [exp] 1063 / 0 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10022091 [exp] 1030 / 0 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 560 / 0 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 511 / 4e-168 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 503 / 3e-165 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 466 / 1e-149 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10033576 [exp] 379 / 1e-119 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10039451 [exp] 269 / 3e-81 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10017618 [exp] 160 / 3e-42 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10020391 [exp] 118 / 5e-28 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.010G077100.1 pacid=42800059 polypeptide=Potri.010G077100.1.p locus=Potri.010G077100 ID=Potri.010G077100.1.v4.1 annot-version=v4.1 ATGGCTTTAGTGCCTAGTCGTCAATTATACATTGATTCTTTTCAAAGCTCCTTCTCGAAATTCCATGGCACTCCTCTCCAATTCTTCAGGTACAGTTCAT CTTTTCCTCTCAGATCACACTCTGGTTATGCATGTTCAATCACTGACAAAAACCCATCTACGAAATCCACCTCATTTCCCACTGATAAATCCAAGACCTT AAATTTATCTACTGGCAGCAGTTGGTTTTTTAATTGGAATAAACCCAACAAGCAAAACCTACCAAGAACCCCTCAAGCTGTGTTTGATTATCGAAGCAAT AACAGTAACAGTAGTGGTAGTGGTAGTACAATGGAGAAAATAGTGGAAAAATTGAAGAAACATGGTTACATGGATGGTGATGTTAATGAGAATAAAGAGA GAATGCAAGAAAGAGTGATAGAGAAAGGGAGTGTTGAGGATATATTTTATGTGGAAGAAGGAATGCTGCCGAATGCACGAGGTGGGTTTTCCAAGGAATC ACCTTTAGGAGTAGAGGATGTGTTTAGGAGTGACGGGGAGGTGAGGTTTCCATGGGAGAAGCCAAAGAAGGAGGAGGATGAGGGGAAGTGGACGGCGAGG AGTAAGAGTAGGACATCATTAGCAGAGCTGACATTGCCAGAATCTGAATTGAGGAGGTTGAGGAACTTGACATATGGAACGAAGAGCAAGACTAGGGTTG GGGGCAGGGGGGTTACTCAGGAAGTAGTTGATGCTATTCATGACAAGTGGAAGACTTCAGAGATTGCGAGAGTGAAAGTTGAGGGTGCACCGGCACTTAA TATGAAGAGGATGCACGAGATATTGGAGAACAAAACTGGGGGCTTGGTGATTTGGAGGTCAGGAGCTACTGTATCTTTATATAGAGGTGTGAGCTATGAG GATCCTGCATTGAAATGGAAAAAAAGGATATTCAAGAAGAAAGAAACATCTTCTAATTCTTTACCAGCAGCTACTAGCATAACTATTGGAAGTCAATCCA AAAATTCTCCTGATAATGAAATACATGCTCCTCGACCAAAAACAGAAATTAATGTGGAGGCTGCAAATCAAAAGGAGACAAAAACACAGACGGATGTAAA ATATGAAGATGAAGTAGACAAGTTGTTGGATGGTCTGGGCCCCAGGTACACAGATTGGCCAGGACTTGATCCACTACCTGTAGATGCAGATATGCTTCCT GGGGTTATTCCAGGTTACCAACCTCCATTCAGGATACTTCCTTATGGAGTAAGACCTACTCTTGGACGACAAGATTCAACATCCTTACGAAGGCTTGCCA GGGTCCTTCCTCCTCATTTTGCAGTAGGCAGAAGCAGGCAGCTCCAAGGCTTGGCTGTGGCCATGATTAAATTATGGGAAAAGAGTTCAATTGTGAAGGT TGCACTTAAACGTGGTGTACAGCTGACTACTAGTGAAAGAATGGCTGAAGATATTAAGAAATTGACAGGGGGCCTGCTGCTATCTAGAAATAAGGATTTC TTGGTGTTCTATAGGGGAAAGGATTTTTTGTCACCAGAGGTCAGTGAAGCATTGCTGGAAAGGGAGAGATTGGCGAAGTCCCTACAAGATGAAGAGGAAC AGGCACGGTTAAGAGCATCTGCCTTGGTTATACCGAGTGATGAAATAATGGAGGAATCTGGAATTGCTGGCAGCCTTGAGGAAACTTTGGATGCAGATGC AAAGTGGGGAAAGAGGTTAGATGATTGTCATAAGGAAAAAATTATAAGAGAAGCTGAAATAGTAAGGCATGCTAGCATTGTCAGAAGGCTTGAGAAGAAG CTTGCTTTCGCTCAAAGAAAGTTAAGAAGAGCCGAACGAACCTTGAATAAGGTGGAAGGGTTTTTAAAGCCATCAGAAAGGCAGGCAGACCCAGAAAGCA TAACTGATGAGGAGAGATTTATGTTTCGCAAGCTTGGTTTGAGGATGAAAGCTTTCTTACTTTTGGGTAGGCGTGGAGTTTTTGATGGTACAGTGGAAAA CATGCACTTGCACTGGAAGTACCGTGAATTGGTTAAGATCATTCTGAAAGCTAAAAGTTTTGAACAGGTTAAAAAAATTGCTCTGGCTCTTGAAGCTGAG AGTGGGGGGGTCTTGGTTTCAGTGGATAAAATCTCCAAAGGATATGCTATAATTGTATACCGAGGAAAGGATTATCAACGCCCTTCCATGTTGAGGCCAA AGAATCTCTTGACAAAGAGGAAAGCTCTGGCCCGCTCAATAGAAATTCAAAGGAGTGAGGCTCTCCAAAATCATGTTTCAGCTCTGGAAATTAAAGTGGA GAAAATAAGATCTGAAATCGAGCAAATGGGCTTTGTCAAAGACAAAGGAGATGAGGAGTTGTATGACAGATTAGATTCTGCTTATCTGACAGATGATGAT GCGGATGATACAGAGGATGAAGGAGATGAAGCGTATCTTGAGACATACAACAGTGAAAATGATGTTGATTATGATGATGAAACTGACAGCACAGTTCACA ATGCCCATCTGGATACGAATCTTCTTAACAATGTTCAGATACAAGAGTCTGAAACAGAACCTGAGGACTACTACGGAGATGAGGTATATCTTGGGACGTA TGACAGTGAAAGCGACGATGGTGGTGATGATTCTGAAACAGTTAATAACCTTGATTCAGAATCTCCGTACAAATTTTCCATGTGA
AA sequence Show only first row Show all	>Potri.010G077100.1 pacid=42800059 polypeptide=Potri.010G077100.1.p locus=Potri.010G077100 ID=Potri.010G077100.1.v4.1 annot-version=v4.1 MALVPSRQLYIDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGYACSITDKNPSTKSTSFPTDKSKTLNLSTGSSWFFNWNKPNKQNLPRTPQAVFDYRSN NSNSSGSGSTMEKIVEKLKKHGYMDGDVNENKERMQERVIEKGSVEDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVRFPWEKPKKEEDEGKWTAR SKSRTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYE DPALKWKKRIFKKKETSSNSLPAATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQKETKTQTDVKYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLP GVIPGYQPPFRILPYGVRPTLGRQDSTSLRRLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTGGLLLSRNKDF LVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLRASALVIPSDEIMEESGIAGSLEETLDADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLEKK LAFAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAE SGGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMGFVKDKGDEELYDRLDSAYLTDDD ADDTEDEGDEAYLETYNSENDVDYDDETDSTVHNAHLDTNLLNNVQIQESETEPEDYYGDEVYLGTYDSESDDGGDDSETVNNLDSESPYKFSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	0	1
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	3.16	0.9769
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	3.16	0.9737
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	3.46	0.9718
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	4.00	0.9758
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	4.24	0.9693
AT4G24090			unknown protein		Potri.001G084500 [exp]	4.58	0.9718
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	4.89	0.9763
AT5G62840			Phosphoglycerate mutase family...		Potri.015G074700 [exp]	6.48	0.9646
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	9.38	0.9674
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	9.79	0.9700

Compare expression of checked genes

Potri.010G077100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.