Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37230 1050 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 352 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 211 / 2e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 205 / 1e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 206 / 4e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 195 / 1e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 190 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 192 / 2e-51 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 192 / 2e-51 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G46100 186 / 4e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G056400 [exp] 390 / 5e-125 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 206 / 7e-57 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G082300 [exp] 202 / 1e-54 AT1G30290 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 197 / 4e-54 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 201 / 7e-54 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 198 / 1e-53 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 199 / 2e-53 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G057900 [exp] 191 / 7e-53 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 193 / 1e-52 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034721 [exp] 1112 / 0 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021645 [exp] 1106 / 0 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017658 [exp] 374 / 2e-118 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 193 / 4e-52 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 193 / 9e-52 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 189 / 2e-50 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018567 [exp] 187 / 2e-50 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039056 [exp] 189 / 3e-50 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 189 / 8e-50 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 185 / 1e-49 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.010G077400.1 pacid=42798770 polypeptide=Potri.010G077400.1.p locus=Potri.010G077400 ID=Potri.010G077400.1.v4.1 annot-version=v4.1 ATGGGGTACCATATCGCTTTTTCTAAACCATTTCAGTTAAAACCTAGGGTTTGTCAAATCTCACTCACACCCTACCTCCATTTCTGCACTTCAATTCCAG CTCCAGGTGAAGATCCTATCTCCCCTAACCCAGAAACAACCGCATCTCCAGGCCCGAAACCTGACCCAAAAACCGAAACCCCAAATGTGGCTCAAGAGAA ACAATACCAGCGAATCCCGAGAGCTAAGCAGCAGCATCGAAGCCCTGAAAAACTAGAGGATATAATTTGTAGAATGATGGCTAATCGGGACTGGACGACC CGGTTGCAGAATTCGATTCGAGCTCTAGTGCCCGAATTCGATCATTCTTTAGTTTATAATGTTTTGCACGGAGCTCGAAAGCCCGATCACGCGCTCCAAT TCTTCAGGTGGGTTGAACGGGCGGGTTTAATTCAACACGACCGCGAAACCCACATGAAGATTATCCAGATTTTGGGTAGATATTCTATGCTTAATCACGC CCGTTGTATTGTTTTAGAAGATATGCCTAAGAAGGGTTTTGAATTAGATGAGGATATGTTTGTTTTGTTAATCGATAGTTATGGTAAGGCTGGGATAGTT CAAGAATCTGTTAAGATGTTTTCTAAAATGAAAGAATTGGGTGTGGAGAGGAGTGTTAAGAGTTATAATGCTTTGTTTAAGGTTATTGTGAGGAAAGGGA GGTATATGATGGCCAAAAGGTTTTTTAATAAGATGCTAGATGAAGGGATTGGGCCGACTAGGCATACTTATAATGTGTTGATATGGGGCTTCTTTTTGTC AATGAGGTTGCGAACTGCAGTCAGGTTTTATGAAGATATGAAGGTTAGAGGGATATCTCCGGATGTGGTTACTTATAATACGATGATTAATGGATATTAT AGGCATAAGAGGATGGAGGAGGCTGAGAAGTTGTTTGCTGAGATGAAGGCAAAGGATATTGCACCTACTGTGATAAGTTATACGACCATGATTAAAGGGT ATTTTGCAGTGGATAGAATTAATGATGGGTTGAGGTTGCTTGAAGAGATGAAGTCGGTTGGTATTAAGCCTAATAATGTGACGTATACGACTTTGTTGCC AGATCTTTGTGATGCTGGGAAAATGACTGAGGCTAAGGATATTTTGAAGGAAATGGTGAGGAGACGCATTGCACCCAAGGATAATTCGATCTTCCTGAAG TTGTTGAACAGTCAGTGCAAGGCTGGGGATTTGAAAGCGGCTGTGGATGTGCTTGATGGAATGATTAAGTTGAGCATTCCATCAGAAGCTGGACATTATG GTGTCTTGATAGAGAATTTCTGCAAGGCTGAGGAGTACGATCAGGCAGTGAAGTTTGTGGATAAGCTCATTGAGAATGATATTATTTTAAGGCCACAGAG TACTTTGGAAATGGAGTCTGGTGCTTATAACCCAGTTATTCAGTATTTGTGCAGCCATGGACAGACTGGAAAAGCAGAAATCTTATTCCGGCAGCTGTTG AAAAAGGGTGTTGAGGATCCTCTTGCCTTTAATAATTTGATCTGTGGGCATGCAAAAGAAGGAACTCCTGATTCTGCTTTTGAAATTCTAAAGATCATGG GTAGGAAAGGAATCCCCCGAGATGCTGATGCTTACAGGTTGCTTATCGAGAGCTACTTGAGGAAAGGTGAGCCAGCTGATGCTAAAACAGCTTTGGATAG TATGATTGAAGATGGACACCTTCCAGATTCATCAGTATTCAGGTCAGTGATGGAGAGTTTGTATGAAGATGGTAGGGTTCAAACTGCTAGTCGTGTGATG AAAAGTATGGTGGAGAAGGGGGTGAAAGAGAACATGGACTTGGTTGCTAAGATTTTGGAAGCTCTTCTCATGAGAGGTCATGAAGAGGAAGCCCTTGGAC GCATTGATCTCCTCATGAGTAGTCAGTGTAATGTCAATTTTGATAGTCTTCTGTCCATTCTTTCTGAAAAGGGCAAGACCATTGCTGCTCTTAAGTTGTT AGATTTTGGATTGCAGAGGGACTGTGACATAGACTTTAAAAGCTATGATAAAGTGTTGGATGCTCTCTTAGCAGCAGGGAAGACTCTCAATGCATATTCA ATTTTGTGTAAAATTATGGAGAAAGGAGGAGTCACTAGTTGGAGGAGCTATGAGGATTTGATTAAGAGTCTTAACCAGGAGGGAAACACAAAGCAGGCTG ATATACTCTCAAGAATGATAAAGGGAGATGATAAGTCACATGAAAACAAGAAAGGGAAGAAGAAAGCTTCTGTTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.010G077400.1 pacid=42798770 polypeptide=Potri.010G077400.1.p locus=Potri.010G077400 ID=Potri.010G077400.1.v4.1 annot-version=v4.1 MGYHIAFSKPFQLKPRVCQISLTPYLHFCTSIPAPGEDPISPNPETTASPGPKPDPKTETPNVAQEKQYQRIPRAKQQHRSPEKLEDIICRMMANRDWTT RLQNSIRALVPEFDHSLVYNVLHGARKPDHALQFFRWVERAGLIQHDRETHMKIIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGIV QESVKMFSKMKELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRTAVRFYEDMKVRGISPDVVTYNTMINGYY RHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAPKDNSIFLK LLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGKAEILFRQLL KKGVEDPLAFNNLICGHAKEGTPDSAFEILKIMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDGHLPDSSVFRSVMESLYEDGRVQTASRVM KSMVEKGVKENMDLVAKILEALLMRGHEEEALGRIDLLMSSQCNVNFDSLLSILSEKGKTIAALKLLDFGLQRDCDIDFKSYDKVLDALLAAGKTLNAYS ILCKIMEKGGVTSWRSYEDLIKSLNQEGNTKQADILSRMIKGDDKSHENKKGKKKASVAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37230			Tetratricopeptide repeat (TPR)...		Potri.010G077400 [exp]	0	1
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	4.79	0.8084
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	8.36	0.8031
AT4G36420			Ribosomal protein L12 family p...		Potri.007G019100 [exp]	11.40	0.7344
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	12.96	0.7873
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	15.49	0.7700	SDH4.2
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.007G028400 [exp]	15.87	0.7535
AT3G49990			unknown protein		Potri.005G234800 [exp]	16.24	0.7661
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	17.23	0.7410
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	19.59	0.7511
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	27.49	0.7209

Compare expression of checked genes

Potri.010G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.