Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 352 / 3e-118 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 317 / 2e-104 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 114 / 1e-27 RING/U-box superfamily protein (.1) AT5G13250 69 / 1e-12 RING finger protein (.1) AT5G44280 51 / 1e-06 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 48 / 1e-05 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G28080 47 / 1e-05 RING finger protein (.1) AT1G61140 44 / 0.0002 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT4G21070 42 / 0.001 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161500 [exp] 616 / 0 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 372 / 1e-125 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 367 / 4e-124 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 362 / 7e-122 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 357 / 5e-120 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 132 / 7e-35 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.001G062700 [exp] 75 / 2e-14 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 72 / 2e-13 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.004G137200 [exp] 62 / 2e-10 AT5G13250 92 / 9e-21 RING finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014749 [exp] 343 / 2e-114 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 320 / 3e-105 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 261 / 6e-83 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 259 / 5e-82 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10003261 [exp] 242 / 7e-75 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 219 / 3e-67 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10039845 [exp] 54 / 2e-07 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10018609 [exp] 54 / 2e-07 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G077800.1 pacid=42797191 polypeptide=Potri.010G077800.1.p locus=Potri.010G077800 ID=Potri.010G077800.1.v4.1 annot-version=v4.1 ATGATGTTAGGCCAGGTGGTGAAGGTTCAAAGAGAGGAAATAGCGGCATGCATGACTTGTCCTCTTTGCAACAAGCTCTTCAGAGACGCCACTACTATCT CTGAGTGCCTCCATACTTTTTGCAGAAAATGCATATACAAGAAGATAACTGATGAGGAGTTGGACAGTTGTCCAGTTTGTGATACTGAATTAGGTTGTTC TCCGCTTGAAAAGCTCAGGGCAGACCACAGCTGGCAAGATTTAAGGGCCAAAATCTTCCTTTCCAATAGAAAGAAGGCCAAGGAACCTGAAACAGTGTCC TTGGTCCCAGAAGACGTGCCCTCGGTCCCAGAAACTGCGCCAGCAGTCCCAGAAGCCATGCCAGTCCAAGAAGCTGATCACTCAGTTCCATTGATAGGTA GAAGAAAGGAGAGATCTCTCTCTTCATTGGTAGTCAGCACACCTAAGATATCCGTCAAGTCTTTTCTGACAGGAAAAAGATCAAAACCTATTGCCAGAAA ACGAGAATCTCCTGTTCTCATTAAGGAGCTGGTTAAGAAAGTGGACGATTACTATGAGAGTTTAAGCTCACCCGAGACTTTAAGCAAAATTGCACAAACT AAAAGGCAGAATTCTTCTACTGCCGAGTCACCCAAACAACACAAACCTAATAAAGTTTCAGAGGATGGTGTTAAACCATGTAAAGGGAAAGCTGATTTTT GGAAACCCTTAAATTGCTCGGTTGAAGGTTCAAGCAAAACAAAGTCTAATAAGTCAGAACTACAGGAAATTCTTGTCCAAATAAAGAAGCTTGATGCCCA GGAGAAAGCTCAATCACTCAAAACCAGTGTTAAGGAGCACGGTGATAAATCGAAAGTTAATGGTGAAGAATCCAACTCGACTTCATGGCCTTCAGTTTCC GTGAAATCTAGACGGCTGCAAGGCATGCAACAAAAAAGAGCAGCTCCCTCTGAGGGGTTGAATATTCCAGCACAGACTATTGTCGATGCAAACAGTAAAT GTGATACAAGATTGAGTCCAATATGGTTCTCATTAGTTGCTTCTGATCATGAGCAGGGTGGAAGTGCGCCCTTGCCACAGATATCTTCGTGCTACTTGAG GGTTAAGGATGGTAGTTTGCCTGTTTCATACATAAAGAAGTATCTTGCCCAGAAGCTGGGTCTTGTTAGGGAAGCTGAGGTGGAGATCTCAATGCGTGGT CAGCCAGTGGTTTCAACGTTGCAGCTGCATAACTTGGTAGACTGGTGGTTGCAGACAGCTTCAGCATCTGAAAGAATACGGACAACTGTGGGCAGTTCAG CTAAAGATTTTGTGATGGTTCTCTCGTATGGTCGTAAAGCTCATCCTCCGTAA
AA sequence Show only first row Show all	>Potri.010G077800.1 pacid=42797191 polypeptide=Potri.010G077800.1.p locus=Potri.010G077800 ID=Potri.010G077800.1.v4.1 annot-version=v4.1 MMLGQVVKVQREEIAACMTCPLCNKLFRDATTISECLHTFCRKCIYKKITDEELDSCPVCDTELGCSPLEKLRADHSWQDLRAKIFLSNRKKAKEPETVS LVPEDVPSVPETAPAVPEAMPVQEADHSVPLIGRRKERSLSSLVVSTPKISVKSFLTGKRSKPIARKRESPVLIKELVKKVDDYYESLSSPETLSKIAQT KRQNSSTAESPKQHKPNKVSEDGVKPCKGKADFWKPLNCSVEGSSKTKSNKSELQEILVQIKKLDAQEKAQSLKTSVKEHGDKSKVNGEESNSTSWPSVS VKSRRLQGMQQKRAAPSEGLNIPAQTIVDANSKCDTRLSPIWFSLVASDHEQGGSAPLPQISSCYLRVKDGSLPVSYIKKYLAQKLGLVREAEVEISMRG QPVVSTLQLHNLVDWWLQTASASERIRTTVGSSAKDFVMVLSYGRKAHPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.010G077800 [exp]	0	1
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	7.61	0.8904
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.008G153700 [exp]	9.38	0.8546
AT2G43250			unknown protein		Potri.007G124700 [exp]	20.49	0.8562
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	22.71	0.8739
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	25.39	0.8664
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	26.72	0.8628
AT5G19151			unknown protein		Potri.008G203800 [exp]	28.24	0.8527
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	29.34	0.8375
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.004G055400 [exp]	30.85	0.8436
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	33.22	0.8598

Compare expression of checked genes

Potri.010G077800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.