Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IAA14.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14550 319 / 8e-111 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 311 / 3e-107 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 284 / 8e-97 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT3G04730 272 / 4e-92 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G29080 213 / 7e-68 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT5G65670 209 / 7e-66 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 205 / 1e-64 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT1G04240 161 / 4e-49 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 157 / 8e-48 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 148 / 3e-44 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161200 [exp] 469 / 9e-170 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 317 / 2e-109 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.013G041400 [exp] 313 / 5e-108 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 284 / 1e-96 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 283 / 3e-96 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G108000 [exp] 218 / 4e-69 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.003G051300 [exp] 213 / 2e-67 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 213 / 4e-67 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.008G161100 [exp] 208 / 5e-67 AT5G43700 238 / 3e-80 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039414 [exp] 313 / 7e-108 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10015907 [exp] 266 / 3e-89 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10039487 [exp] 241 / 2e-79 AT4G14550 232 / 5e-77 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10006585 [exp] 236 / 3e-77 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10042929 [exp] 213 / 4e-67 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 211 / 6e-67 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10014731 [exp] 207 / 4e-66 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1) Lus10019241 [exp] 207 / 1e-65 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 206 / 2e-65 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10012984 [exp] 206 / 8e-65 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.010G078300.4 pacid=42797193 polypeptide=Potri.010G078300.4.p locus=Potri.010G078300 ID=Potri.010G078300.4.v4.1 annot-version=v4.1 ATGGCAACAGCTACCGTGTTAGGTACCGAGATGGCAGATTTGAACTACAAAGAGACTGAGCTGTGTCTAGGATTGCCTGGTGCTGTTGGTGTCAAAAATG AAGTTGAGACACCTAATAAGGCTACTGGGAAAAGAGGGTTTGCTGAGACTGTTGATTTGAAGCTTAATCTTCAGGCTAAAGAAGGTGTCATGGATCTGAA TGAGAATATCAAGAATATTGCTTCAAAGGACAAGAACCACCTTCCTGCTGATACCATCAAGGACCCTGCTAAGCCACCAGCCAAGGCACAAGTTGTAGGT TGGCCACCAGTTAGATCTTACAGGAAGAACGTTTTGGCTCAGAAGAACGCCAGTGAGGAAGGTTTCAGGGCACAAGTTGTAGGTTGGCCACCACTTAGAT CTTACAGGAAGAACGTTTTGACTCAGAAGAACGCCAGTGAGGAAGGTGATAAGGCAAGCACTGGCGGAAGCAGTGCAGCATTTGTGAAGGTTTGCATGGA TGGTGCACCCTATCTTCGCAAGGTGGACTTGAAGATGTACAAGAGCTACCAAGAATTATCTGATGCCTTGGCCAAAATGTTCAGTTCCTTCACCATGGGT AATTATGGAGCCCAAGGAATGATAGACTTTATGAATGAAAGCAAGCTGATGGATCTACTTAACAGTTCCGAGTATGTGCCATCCTATGAAGACAAGGATG GTGATTGGATGCTTGTGGGTGATGTTCCATGGGAGATGTTTGTTGATTCATGCAAGCGCCTGCGCATAATGAAAGGATCTGAAGCCATTGGACTTGTTTC AGCACCAAGAGCAATGGAGAAATGCAAGAGCAGAACCTGA
AA sequence Show only first row Show all	>Potri.010G078300.4 pacid=42797193 polypeptide=Potri.010G078300.4.p locus=Potri.010G078300 ID=Potri.010G078300.4.v4.1 annot-version=v4.1 MATATVLGTEMADLNYKETELCLGLPGAVGVKNEVETPNKATGKRGFAETVDLKLNLQAKEGVMDLNENIKNIASKDKNHLPADTIKDPAKPPAKAQVVG WPPVRSYRKNVLAQKNASEEGFRAQVVGWPPLRSYRKNVLTQKNASEEGDKASTGGSSAAFVKVCMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTMG NYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLVSAPRAMEKCKSRT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	0	1	Pt-IAA14.2
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.008G055400 [exp]	2.44	0.8796
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	3.31	0.9151	Pt-MYB94.1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	4.24	0.8913
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028701 [exp]	5.29	0.8892
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	11.22	0.8944
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.006G099900 [exp]	14.96	0.8787	CAX3.1
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	22.13	0.8741
AT4G33110			S-adenosyl-L-methionine-depend...		Potri.018G060000 [exp]	30.16	0.8630
AT1G33110			MATE efflux family protein (.1...		Potri.013G069700 [exp]	31.32	0.8765
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	34.11	0.8646

Compare expression of checked genes

Potri.010G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.