Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43700 249 / 3e-85 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 234 / 2e-79 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 223 / 4e-75 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1) AT4G14560 201 / 1e-66 AUX_IAA AXR5, IAA1 AUXIN RESISTANT 5, indole-3-acetic acid inducible (.1) AT4G14550 172 / 2e-54 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT4G29080 174 / 3e-54 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT3G04730 170 / 2e-53 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT1G04250 165 / 2e-51 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT3G23050 163 / 2e-50 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT2G22670 158 / 1e-47 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161100 [exp] 342 / 3e-121 AT5G43700 238 / 3e-80 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.005G218200 [exp] 270 / 3e-93 AT5G43700 243 / 2e-82 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.013G041300 [exp] 266 / 1e-91 AT5G43700 239 / 5e-81 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.005G053800 [exp] 258 / 1e-88 AT5G43700 239 / 7e-81 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.002G045000 [exp] 256 / 8e-88 AT5G43700 236 / 5e-80 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.013G041400 [exp] 169 / 7e-53 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 168 / 1e-52 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 168 / 2e-52 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 167 / 3e-52 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039413 [exp] 286 / 2e-99 AT1G04240 250 / 2e-85 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) Lus10039488 [exp] 272 / 6e-94 AT5G43700 247 / 3e-84 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Lus10014729 [exp] 234 / 5e-79 AT1G04240 230 / 2e-77 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) Lus10002723 [exp] 228 / 2e-76 AT5G43700 221 / 4e-74 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Lus10024853 [exp] 210 / 4e-69 AT1G04240 216 / 1e-71 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) Lus10018764 [exp] 206 / 2e-67 AT5G43700 210 / 4e-69 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Lus10028222 [exp] 186 / 5e-59 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 167 / 9e-51 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 163 / 1e-49 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10011583 [exp] 160 / 1e-48 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.010G078400.3 pacid=42798683 polypeptide=Potri.010G078400.3.p locus=Potri.010G078400 ID=Potri.010G078400.3.v4.1 annot-version=v4.1 ATGGAAGGTGGTGTTGCATATGAGAATGATCTAAACCTCAAGGCAACTGAGCTTAGACTGGGGTTGCCAGGGACGAGCTGTACTAATGAAGAACAAGCAG TTTCTGGTGCTAGAAACAACAAACGACCATTGCCAGAGACCAGAGAGGAGCGTGGAGCAAAAGGCAAATCTGATCCTCGACATGATGACCAAGAAACTGC CCCTGCTCCCAAGGCACAGATAGTGGGCTGGCCACCAATCAGATCCTACCGGAAAAACACCCTGCAGCCAAAGAAAGCTGAAGCCGAGGCTGCGGCTGGG ATGTACGTTAAAGTAAGCATGGATGGAGCACCATACCTTAGAAAGATTGATCTAAAGGTTTACAAGGGATACCCTGAGCTCCTAAAGGCTTTAGAGAACA TGTTCAAGCTCACCATAGGTGAGTACTCTGAAAGGGAAGGCTACAAAGGATCAGAATATGCACCTACTTATGAGGACAAAGATGGTGACTGGATGCTGAT TGGAGATGTTCCATGGGATATGTTCCTGTCATCCTGTAAGAAATTGAGAATCATTAAAGGATCAGAAGCAACAGGTTAA
AA sequence Show only first row Show all	>Potri.010G078400.3 pacid=42798683 polypeptide=Potri.010G078400.3.p locus=Potri.010G078400 ID=Potri.010G078400.3.v4.1 annot-version=v4.1 MEGGVAYENDLNLKATELRLGLPGTSCTNEEQAVSGARNNKRPLPETREERGAKGKSDPRHDDQETAPAPKAQIVGWPPIRSYRKNTLQPKKAEAEAAAG MYVKVSMDGAPYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLIGDVPWDMFLSSCKKLRIIKGSEATG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.010G078400 [exp]	0	1
AT1G13920			Remorin family protein (.1)		Potri.008G093300 [exp]	2.82	0.7317
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	4.47	0.6913
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	8.48	0.6642
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.001G301400 [exp]	9.48	0.6528
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.014G115600 [exp]	13.49	0.7203
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	14.69	0.7139
AT3G63220			Galactose oxidase/kelch repeat...		Potri.002G050600 [exp]	18.46	0.6134
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	19.89	0.6399
AT3G17120			unknown protein		Potri.010G148200 [exp]	28.49	0.6199
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	30.98	0.6493

Compare expression of checked genes

Potri.010G078400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.