Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 288 / 6e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 226 / 5e-65 Protein kinase superfamily protein (.1) AT3G21630 197 / 3e-55 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G70460 194 / 3e-53 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G51940 192 / 6e-53 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G23540 192 / 2e-52 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G76360 186 / 8e-52 Protein kinase superfamily protein (.1) AT1G10620 189 / 2e-51 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G59110 182 / 2e-50 Protein kinase superfamily protein (.1) AT1G69790 179 / 2e-50 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160600 [exp] 1082 / 0 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.008G160501 [exp] 403 / 1e-138 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 390 / 4e-128 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 319 / 2e-100 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 302 / 2e-94 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 281 / 5e-86 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128300 [exp] 258 / 2e-77 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 254 / 1e-75 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 238 / 2e-69 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021889 [exp] 672 / 0 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 586 / 0 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10041171 [exp] 538 / 0 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10016793 [exp] 364 / 5e-118 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 357 / 8e-110 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016299 [exp] 291 / 2e-89 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 283 / 1e-86 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 274 / 3e-83 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 272 / 2e-82 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10032735 [exp] 268 / 1e-80 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.010G078700.1 pacid=42797960 polypeptide=Potri.010G078700.1.p locus=Potri.010G078700 ID=Potri.010G078700.1.v4.1 annot-version=v4.1 ATGACATCCAAATCCCATCTAGTCTTCTCTCTCCTCTTTTTTATCTATTACAGTACTATCCTCCACCATTTGCAAGCCCAACCAAGCACCCAAGGATTCA CCTGCACAGCCAATCAGAGTTCCTTTCCATGCCAAACCTATGCCTTCTACCGAGCTACAGCTCCTAACTTCCTTGACCTTTCCTCAATCGGTGACCTTTT CTCGGTTAGCCGCCTTATGATATCAAAACCAAGTAACATCTCCTCTCCAGCCTCTCCTCTCATCCCCAATCAACCCTTGTTTGTCCCTTTATCATGTTCT TGCAACACCATGAATGGCACTAGTATCTCCTTTGCAAACATCACATATACCATAAAGCCAAATGACACTTTCTACCTTGTCTCAACTGAATACTTCGGAA ACCTTACTACCTACCAGTCTGTTCAACTTGTTAACCCTACGCTTATCCCCACACTACTCCAAATAGGAGTAGAAGTGATCTTTCCAATATTTTGCAAGTG TCCTAATCAAACTCAATTGCAAAACAAGGTGAATTATCTGGTATCTTATGTGTTTCAGCCTTCTGATAACTTATCATCAGTTGCTTCAACATTTGGAGTC GAAACACAATCTATTGTGGATGCTAATGGCAATAACATACAGCCTTTTGATACCATATTCATACCAGTAAATCAACTTCCACAACTGGCACAACCTACGG TTTTTCCTTCTTTGGCGCCTTCTGGGAAGACTCAGAGGAAAGGTTTGATCATAGGATTAGCAGTTGGACTAGGAATTGCCGGGCTTTTGTTGGTCTTGGT AAGCGGGGTTTGTTTTTTTAGAGACGGTGTATTGAAGAAGAGACGGGATTTTGAGAGAGATGATCAGGAGAAGCAGAGGATGCAGTTCAATGGAGGAAGG AAAGGGTTGAAGGATATAGAAGTGAATTTGATGGCAGATGTTTCAGATTGCTTGGATAAGTACAGGGTCTTTAAGATTGATGAACTGAAAGAAGCTACTG ATGAGTTCGGTGAGAATTGCTTGATTGAAGGATCTGTGTTTAAAGGGTCCATAAATGGAGAGACCTATGCCATCAAGAAGATGAAGTGGAATGCTTGTGA GGAGCTCAAGATATTGCAGAAGGTAAACCATGGCAACTTGGTGAAGCTAGAAGGCTTTTGCATAGACCCTGAGGATGCAAATTGCTATCTGGTCTACGAG TACATCGACAATGGCTCTCTGCATTCGTGGTTGCATGGTAACGAGAAAGAAAAACTAAGCTGGAAAACAAGGTTACGCATTGCAATTGACGTTGCAAATG GTCTCCAATACATCCATGAGCACACTAGGCCAAGGGTTGTACACAAAGACATTAGAAGCAGCAACATTCTTCTAGACTCGAGCATGAGAGCCAAAATTGC CAACTTTGGACTAGCAAAATCAGGCTACAATGCCATAACAATGCACATTGTCGGCACCCAAGGCTACATTGCACCTGAATATTTAGCTGACGGTGTGGTG TCAACAAGAATGGATGTTTTCTCATTTGGTGTGGTTTTGCTTGAGCTAATCTCAGGCAAAGAAGCAATTGACGAAGAAGGCAAGGTTTTGTGGGCAGAAG CTAGTGGAATTTTGCAGGGAAATGTTGAAGAGAGGAAGGTGAAGAGATTGACACCATGGATGGATAAGGTTCTATTAGAGCAGTCATGCTTAATGGAGAG TGTAATGAATGCAATGGTTGTTGCAATTGCTTGCTTGCATAGAGATCCATCAAAGAGGCCCAGCATGGTGGATATTGTTTATGCCTTGTGTAAGACTGAT GATCTGTTTTTTGACATCTCAGAAGACGTATTGTCAGACCCTCAGGTAATGGCAAGATAA
AA sequence Show only first row Show all	>Potri.010G078700.1 pacid=42797960 polypeptide=Potri.010G078700.1.p locus=Potri.010G078700 ID=Potri.010G078700.1.v4.1 annot-version=v4.1 MTSKSHLVFSLLFFIYYSTILHHLQAQPSTQGFTCTANQSSFPCQTYAFYRATAPNFLDLSSIGDLFSVSRLMISKPSNISSPASPLIPNQPLFVPLSCS CNTMNGTSISFANITYTIKPNDTFYLVSTEYFGNLTTYQSVQLVNPTLIPTLLQIGVEVIFPIFCKCPNQTQLQNKVNYLVSYVFQPSDNLSSVASTFGV ETQSIVDANGNNIQPFDTIFIPVNQLPQLAQPTVFPSLAPSGKTQRKGLIIGLAVGLGIAGLLLVLVSGVCFFRDGVLKKRRDFERDDQEKQRMQFNGGR KGLKDIEVNLMADVSDCLDKYRVFKIDELKEATDEFGENCLIEGSVFKGSINGETYAIKKMKWNACEELKILQKVNHGNLVKLEGFCIDPEDANCYLVYE YIDNGSLHSWLHGNEKEKLSWKTRLRIAIDVANGLQYIHEHTRPRVVHKDIRSSNILLDSSMRAKIANFGLAKSGYNAITMHIVGTQGYIAPEYLADGVV STRMDVFSFGVVLLELISGKEAIDEEGKVLWAEASGILQGNVEERKVKRLTPWMDKVLLEQSCLMESVMNAMVVAIACLHRDPSKRPSMVDIVYALCKTD DLFFDISEDVLSDPQVMAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	2.23	0.9363
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	3.00	0.9284	FOMT2,Pt-OOMT2.13
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	4.00	0.9334
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	4.89	0.9065
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.005G093200 [exp]	5.19	0.8958	NCPGS.4
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	6.32	0.9039
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	6.48	0.8999
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	13.85	0.8810
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.010G123700 [exp]	14.28	0.8922
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	14.49	0.8741

Compare expression of checked genes

Potri.010G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.