Plant FIBer expression Database

Potri.010G078800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43750 241 / 4e-81 PnsB5, NDH18 Photosynthetic NDH subcomplex B 5, NAD(P)H dehydrogenase 18 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021890
[exp]
249 / 3e-84 AT5G43750 243 / 4e-82 Photosynthetic NDH subcomplex B 5, NAD(P)H dehydrogenase 18 (.1)
Lus10041171
[exp]
147 / 4e-41 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G078800.1 pacid=42798796 polypeptide=Potri.010G078800.1.p locus=Potri.010G078800 ID=Potri.010G078800.1.v4.1 annot-version=v4.1
ATGGCAGCGAGTTCATCACTCTCAATTCTGTTGGCAAATCCAGTCCCTAAAATCAGCTGTAAGAACCAAATTGGAAATATGGTTAGTGCTTTTAACCAGA
GAACCATCAAGAAATTGGGAACTAAATATGGTTCAAGAACCAGATTGTATGCAGCTGGGTTGTCTGAGATTGAGCCTGACCTCAATGAAGATCCTAGAGA
CCGTTGGGCCACTCCTGGTGTTGATGCTGAAGATTTCAAGTATGGAGAGTGGGATGGGCATCATACTTACTTTGAAGGCCAAGACAAAAGAACGTACTGG
GAAATACTGAAAGAAGAATATACCTCAACAGAGCCCCCAACAGGTTTTCAAGGGTTTATTTCATGGATCTTCCTTCCAGCAGTTGCTGCTGGGATGTATT
TCAATGTGCCGGGGGAGTATCTGTTCATTGGAGCAGGTCTATTTGTGTTTATTTTCTGTGTGATTGAGATGGATAAACCCGACAAGCCACACAACTTTGA
GCCCCAGATATACAATATGGAGAGAGGTGCTCGTGACAAGTTAATAGATGACTATAATACCATGAGCATATGGGACTTCAATGAGAAATACGGAGACCTC
TGGGATTTCACCATAACAAGGGAAGACATAACCAAGAGATAA
AA sequence
>Potri.010G078800.1 pacid=42798796 polypeptide=Potri.010G078800.1.p locus=Potri.010G078800 ID=Potri.010G078800.1.v4.1 annot-version=v4.1
MAASSSLSILLANPVPKISCKNQIGNMVSAFNQRTIKKLGTKYGSRTRLYAAGLSEIEPDLNEDPRDRWATPGVDAEDFKYGEWDGHHTYFEGQDKRTYW
EILKEEYTSTEPPTGFQGFISWIFLPAVAAGMYFNVPGEYLFIGAGLFVFIFCVIEMDKPDKPHNFEPQIYNMERGARDKLIDDYNTMSIWDFNEKYGDL
WDFTITREDITKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43750 PnsB5, NDH18 Photosynthetic NDH subcomplex... Potri.010G078800
[exp]
0 1
AT2G33450 Ribosomal L28 family (.1) Potri.010G068500
[exp]
2.00 0.9889
AT5G20140 SOUL heme-binding family prote... Potri.018G073501
[exp]
3.46 0.9876
AT3G26070 Plastid-lipid associated prote... Potri.001G209600
[exp]
4.00 0.9859
AT2G37240 Thioredoxin superfamily protei... Potri.006G133100
[exp]
4.89 0.9838
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.001G005900
[exp]
5.47 0.9839
AT3G02730 TRXF1, ATF1 thioredoxin F-type 1 (.1) Potri.019G054800
[exp]
5.47 0.9791 PtrcTrxf
AT4G32260 PDE334 PIGMENT DEFECTIVE 334, ATPase,... Potri.018G026500
[exp]
5.65 0.9807
AT4G32260 PDE334 PIGMENT DEFECTIVE 334, ATPase,... Potri.006G255600
[exp]
6.00 0.9795
AT5G58330 lactate/malate dehydrogenase f... Potri.008G031700
[exp]
6.48 0.9808
AT5G64480 unknown protein Potri.001G286200
[exp]
7.74 0.9787

Potri.010G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.