Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23020 1047 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G73710 592 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 205 / 3e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 195 / 9e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 190 / 2e-50 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39980 187 / 5e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30825 184 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 179 / 3e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 181 / 6e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 181 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144800 [exp] 594 / 0 AT1G73710 1206 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 219 / 4e-60 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 218 / 2e-59 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 211 / 2e-56 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 204 / 2e-55 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 202 / 2e-54 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 199 / 5e-53 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 200 / 7e-53 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 197 / 1e-52 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041172 [exp] 1154 / 0 AT3G23020 953 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021891 [exp] 339 / 2e-109 AT3G23020 282 / 2e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 212 / 5e-57 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 204 / 4e-55 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 193 / 3e-51 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 193 / 5e-51 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 191 / 4e-50 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 191 / 4e-50 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008650 [exp] 184 / 5e-48 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015530 [exp] 184 / 5e-48 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G078900.3 pacid=42797503 polypeptide=Potri.010G078900.3.p locus=Potri.010G078900 ID=Potri.010G078900.3.v4.1 annot-version=v4.1 ATGTTTGTAAAACTGCAATTAGATGCCCGTTGTTTTAACATATTGAGCTCCCCCAGGACCTCACCCATCACAGGAGCTTCAGTCTCCACAAACACAGGAG TATCACTTTCTCCACTAGAAAAGATTGAAACTGTCAAGAAACGCAGAGAGCAAAGCCTTCTTGAAATCCCCAATAGACGAATTCCCAAGAAGTTCAACAC AGATCACAAACAGACTCCTAATAAACCTAGCTTCAATAAAAACCCAGATAGAGAACCGAGAAGTAACTCAAGGAATAGTACTCGAGTTGAAAATAAGAAG AGTTTTGGGGTTGGTTTGGAGAGGTTCGATGGTAATGGCTCGGTTGATAAAGCGCACACCAAATGTTCGAAGAAATGGGCATATTATGGAGGTTGTATTC CATCAATTTTGGAAGCTCTTGATACGATTAAAGACCTTGACGAGGCATTGAAGCCATGGGAGGATACTCTTAGTAACAAAGAGAGGAGCATAATTTTGAA GGAGCAGTCTAGCTGGGAGAGAGCTTTGGAGATTTTTGAGTGGTTTAAGAGAAAGGGTTGCTATGAGTTGAATGTGATTCACTATAATATTATGCTCAGG ATTCTTGGGCGAGCGCGAAATTGGAGCCATGTTGAATGTTTGTGTAATGAAATGAGAATTAAACAGATTTTGCCTGTCAATTCTACATATGGTACTTTGA TTGATGTTTATAGCAAAGGTGGCCTCAAAGAAGAGGCACTTCATTGGCTTAAGAAGATGAATGATCGAGGAATGGTACCAGATGAGGTTACTATGGGAAT TGTTATACAAATGTACAAGAAAGCTGGCGAGTTTCAAAAGGCGGAAGAGTTTTTCAAGAATTGGACACTGGGTGAGTCTATAAAGCATGAAGGAACCAGT AAAGCAAGTGCTGGGGTGCAGAATGGTGTGCAGGTCAGTGTTTCTTTGAGCTCATATACATACAATACGTTGATTGACACTTATGGGAAGGCAGGGCAAC TTAAAGAAGCATCTGAGACTTTTGCAAAGATGCTTAGAGAAGGTATTGTGCCAACAACTGTAACTTTTAATACCATGATCCACATTTGTGGTAACCATGG CCAGCTTGAAGAAGCGGGTTCACTTATGCAGAAGATGGAGGAGCTCCGATGCCCACCAGACACAAGGACGTATAACATTCTCATCTCCCTTCATGCGAAG CATGATAATATAAGCATGGCAGCTAGCTACTTTAAAAGGATGAAGGAGGCTAGATTAGTGCCAGATCATGTGAGTTACCGCACACTCTTGTATGCCTTCT CAATAAGGCATATGGTCAGTGATGCAGAAGACCTGGTGTCTGAGATGGATGAAAAGGGTTTGGAGATTGATGAGTATACCCAGTCTGCTCTGACTAGAAT GTACATAGAAGCTGGGATGCTTGAGAAATCATGGCTTTGGTTCAGGAGATTTCATCTCATGGGGAATATGAGTTCTGAGTGCTATTCTGCCAGCATTGAT GCATATGGGGAGCGCGGCCATATTTTGGAAGCTGAGAAAGTTTTCATGAGCTGCCAAGAGGGGAAGATGCTGACTGTCCTCGTGTTTAATGTGATGATTA AAGCATATGGGTTAGCGCAGAAATATGACAAAGCATGTCAGTTGTTTGACAGCATGGAGAGTCATGGTGTACTTCCAGATAGATGTAGCTATAGTTCTAT CATACAAATTTTGGCTGGTGCTGACTTGCCAGACAAAGCAAGACATTATCTGAAGAAGATGCAAGAGGCAGGATTGGTTAGTGATTGCATCTCCTATTGT GCTGTGATCTCAAGCTTTGTGAAATTCGGTAAACTGGAAAAGGCTGAGGGGCTTTATAACGAGATGATAGGTTTTGATGTGAAGCCAGATGTTATAGTAT ATGGTGTACTGATAAACGCGTTTGCTGATGCTGGAAGTGTTAAAGAAGCTCTTGGTTATGTAGATGCAATGAAAAGAGCGGGTTTGCCTGGAAATACAGT CATATACAACTCCTTAATCAAGCTTTATACCAAAGTCGGGTACTTGAAAGAAGCAGAAGAAACATATCAGCTGCTTCAGTCGTCAGATTCTGGTCCTGAT GCATATTCTTCAAACTGTATGATAGATCTCTACAGCGAACAGTCCATGGTCAAGCAAGCAGAAAAGATTTTTGAGAGCTTGAAGAGAAAAGGGAACACAA ATGAGTTTACTTTTGCAATGATGTTGTGCATGTACAAAAGACTTGGGAGGTTTGAGGAAGCCACTCAGATTGCAAAACAGATGAGAGACTTGGGACTTTT GACTGACTTGTTAAGCTATAATAATGTGCTTGGGTTGTATGCATTGGATGGCAGATTCAAAGAGGCTGTGGGAACTTTCAAGGAAATGGTAGAAGCTTCC GTTCAACCCGATGATTGTACATTCAAATCTCTTGGAATTGTTCTGGTAAAATGTGGAATATCAAAGAAAGCTGTTAGCAAGCTTGAAGCAACTACGAAAA ATGATTATCAGAAAGGTTTGCAGGCATGGATGTTAGCTCTCTCCACTGTAGCTGATATAGATGATGATTATGACGAGTAA
AA sequence Show only first row Show all	>Potri.010G078900.3 pacid=42797503 polypeptide=Potri.010G078900.3.p locus=Potri.010G078900 ID=Potri.010G078900.3.v4.1 annot-version=v4.1 MFVKLQLDARCFNILSSPRTSPITGASVSTNTGVSLSPLEKIETVKKRREQSLLEIPNRRIPKKFNTDHKQTPNKPSFNKNPDREPRSNSRNSTRVENKK SFGVGLERFDGNGSVDKAHTKCSKKWAYYGGCIPSILEALDTIKDLDEALKPWEDTLSNKERSIILKEQSSWERALEIFEWFKRKGCYELNVIHYNIMLR ILGRARNWSHVECLCNEMRIKQILPVNSTYGTLIDVYSKGGLKEEALHWLKKMNDRGMVPDEVTMGIVIQMYKKAGEFQKAEEFFKNWTLGESIKHEGTS KASAGVQNGVQVSVSLSSYTYNTLIDTYGKAGQLKEASETFAKMLREGIVPTTVTFNTMIHICGNHGQLEEAGSLMQKMEELRCPPDTRTYNILISLHAK HDNISMAASYFKRMKEARLVPDHVSYRTLLYAFSIRHMVSDAEDLVSEMDEKGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLMGNMSSECYSASID AYGERGHILEAEKVFMSCQEGKMLTVLVFNVMIKAYGLAQKYDKACQLFDSMESHGVLPDRCSYSSIIQILAGADLPDKARHYLKKMQEAGLVSDCISYC AVISSFVKFGKLEKAEGLYNEMIGFDVKPDVIVYGVLINAFADAGSVKEALGYVDAMKRAGLPGNTVIYNSLIKLYTKVGYLKEAEETYQLLQSSDSGPD AYSSNCMIDLYSEQSMVKQAEKIFESLKRKGNTNEFTFAMMLCMYKRLGRFEEATQIAKQMRDLGLLTDLLSYNNVLGLYALDGRFKEAVGTFKEMVEAS VQPDDCTFKSLGIVLVKCGISKKAVSKLEATTKNDYQKGLQAWMLALSTVADIDDDYDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	0	1
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	2.44	0.9749
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	4.00	0.9579
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	4.47	0.9683
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	4.47	0.9611
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	4.89	0.9437
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	8.12	0.9653
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	8.83	0.9508
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	10.09	0.9596
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	12.12	0.9588
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	13.41	0.9600

Compare expression of checked genes

Potri.010G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.