Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CIPK4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23000 402 / 5e-138 PKS7, ATSRPK1, ATSR2, CIPK7, SnRK3.10 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) AT4G14580 400 / 2e-137 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT5G45820 308 / 3e-101 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 303 / 7e-100 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G25110 299 / 5e-97 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT2G30360 295 / 7e-96 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT4G30960 294 / 1e-95 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G10930 293 / 4e-95 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G58380 292 / 2e-94 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G21326 288 / 4e-93 Ca2+regulated serine-threonine protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160200 [exp] 619 / 0 AT3G23000 399 / 7e-137 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.016G133500 [exp] 316 / 1e-103 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 302 / 1e-98 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 302 / 2e-98 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 301 / 3e-98 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.019G127500 [exp] 299 / 3e-97 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 296 / 4e-96 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.018G108500 [exp] 294 / 1e-95 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G019900 [exp] 294 / 3e-95 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021892 [exp] 455 / 3e-158 AT3G23000 427 / 2e-147 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10039404 [exp] 346 / 4e-117 AT3G23000 356 / 2e-121 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10014163 [exp] 313 / 7e-103 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 311 / 5e-102 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 307 / 3e-100 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10042229 [exp] 301 / 3e-98 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10029054 [exp] 299 / 1e-97 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 297 / 6e-97 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 295 / 5e-96 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 293 / 3e-95 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.010G079000.1 pacid=42799437 polypeptide=Potri.010G079000.1.p locus=Potri.010G079000 ID=Potri.010G079000.1.v4.1 annot-version=v4.1 ATGGAACCACCACCACAAACCCTGCCGCCGCAACCACTACAAAGAACCTCCTCGGTCCCGACCACACTTCTCAACAAATACGAAGTAGGCCGATTATTAG GCCGTGGCAGCTTTGCAAAAGTGTATGCAGCCCGTTCTTTATCCGACAAGACACAGCTGGTAGCGATCAAAATCATCGACAAAACAAAAACCGATGCTGC CATGGAACCCCGCATTATCTCCGAGATCTCAGCCATGCACCGCCTCCAACACCACCCAAACGTTCTCAAGATCCACGAAGTTATGGCTACGAAAACCAAA ATCTACCTCGTCATGGAACTTGCCTCGGGAGGCGATCTTTTCTCTAAGATCCGGAAGATGGGCAAACTTAAAGAACCAGCCGCACGTCGTTACTTTCAAC AACTTGTGTCTGCCATCCACTTCTGCCATCAAAATGGTGTCTCTCACCGCGACATCAAGCCTCATAATTTGCTCCTTGACGGTAAAGGTAATTTAAAAAT ATCTGATTTTGGACTCTCGGCGTTAAAGAATGGATGTGTTAATGGTGGTTTTATGCTTCAAACGGCTTGTGGGACTCCGGCTTTCACAGCACCGGAAGTT ATGGCGCAGCGGGGCTACGACGGATCTAAAGCGGATGCTTGGTCTTGTGGGGTCATTTTGTTCTTTTTATTATCGGCTTCCTTGCCTTTTGATGACAGTA ATCTTGCAGTTATGTACAGGAAAATTCGTAAAGGAGAATATCAATTGCCTTCTTGTTTACCAAAGTCGGTTAAATCGATTATAAACCAACTTCTCGACCC GAATCCTAATAAAAGAATGAGCATAGAAGCGTTAATGAAACATCCTTGGTTTTTGAAGAAGTTTGAATTACCAACTAAAAGTAGTGTGTTCGAGTCGGAT TATAAAGAATATTGTAAATTTGATAAGAGTGCGGCTGGGGGCATTAATGCGTTTGATTTAATATCTCTGTCTTCAGGGTTGGATTTGTCAGGGTTGTTTG AGGTTAAACACGCGAGGGATAGAAGATTTACATCAAGCGAAACGGTGGAAAGAGTAACGGAGAGAGTGAGAGAGGTTGGAGGGAGATTGGGATATATAGT GGAGGAAGGAATGGTTGGGGGTGCTATAGGGTTGGGGAAAGGGAGGGTGGGATTGGTGTTTGAGGTGTGGGAAATAGTGGAGAAGCTGTTGGTGGTGGAA GTTAAGGTGGTGGAGCGTGGTGGGGTGGAATTTGAGGACCTTCATTGGGGAGAACTGAAAGAAGGGCTTGGAGATGTTGTGCTTCAATGGAATGATGATG CTATGTGA
AA sequence Show only first row Show all	>Potri.010G079000.1 pacid=42799437 polypeptide=Potri.010G079000.1.p locus=Potri.010G079000 ID=Potri.010G079000.1.v4.1 annot-version=v4.1 MEPPPQTLPPQPLQRTSSVPTTLLNKYEVGRLLGRGSFAKVYAARSLSDKTQLVAIKIIDKTKTDAAMEPRIISEISAMHRLQHHPNVLKIHEVMATKTK IYLVMELASGGDLFSKIRKMGKLKEPAARRYFQQLVSAIHFCHQNGVSHRDIKPHNLLLDGKGNLKISDFGLSALKNGCVNGGFMLQTACGTPAFTAPEV MAQRGYDGSKADAWSCGVILFFLLSASLPFDDSNLAVMYRKIRKGEYQLPSCLPKSVKSIINQLLDPNPNKRMSIEALMKHPWFLKKFELPTKSSVFESD YKEYCKFDKSAAGGINAFDLISLSSGLDLSGLFEVKHARDRRFTSSETVERVTERVREVGGRLGYIVEEGMVGGAIGLGKGRVGLVFEVWEIVEKLLVVE VKVVERGGVEFEDLHWGELKEGLGDVVLQWNDDAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.010G079000 [exp]	0	1	CIPK4.2
AT3G26840			Esterase/lipase/thioesterase f...		Potri.017G062200 [exp]	3.00	0.7900
					Potri.009G091700 [exp]	3.74	0.7523
					Potri.001G198800 [exp]	4.58	0.8055
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.019G067400 [exp]	6.92	0.7913
AT3G47090			Leucine-rich repeat protein ki...		Potri.005G030555 [exp]	13.49	0.7440
AT5G15570			Bromodomain transcription fact...		Potri.017G094900 [exp]	18.65	0.7458
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.014G089600 [exp]	22.04	0.7534
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G137800 [exp]	23.49	0.7169
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	24.08	0.7145
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.003G189700 [exp]	25.45	0.7505

Compare expression of checked genes

Potri.010G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.