Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20780 158 / 2e-39 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 156 / 5e-39 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G68940 147 / 7e-36 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT3G46510 81 / 3e-15 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 76 / 1e-13 AtPUB12 PLANT U-BOX 12 (.1) AT3G18710 64 / 2e-10 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT1G60190 64 / 3e-10 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT5G42340 64 / 4e-10 PUB15 Plant U-Box 15 (.1) AT1G71020 64 / 4e-10 ARM repeat superfamily protein (.1.2) AT1G23030 64 / 4e-10 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102000 [exp] 395 / 5e-121 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 387 / 4e-118 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 367 / 8e-111 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.003G201000 [exp] 228 / 3e-62 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 220 / 1e-59 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 209 / 3e-55 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 184 / 1e-47 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 182 / 3e-47 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G136500 [exp] 164 / 5e-41 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039402 [exp] 1313 / 0 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 372 / 2e-112 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10006638 [exp] 274 / 5e-85 ND / Lus10030224 [exp] 295 / 7e-85 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10034132 [exp] 191 / 4e-50 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 182 / 3e-47 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 178 / 2e-45 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 140 / 1e-33 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 139 / 5e-33 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 134 / 4e-32 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.010G079200.4 pacid=42797598 polypeptide=Potri.010G079200.4.p locus=Potri.010G079200 ID=Potri.010G079200.4.v4.1 annot-version=v4.1 ATGGCATTGGAACTGGTACCCATAGGAACCATTTTGGCTGTGTTAACGAGCCAGGTTCTTAAAACTGCCCAGGCTGCAAAGGATGTTCTAATTGAGAAGG AGAGTTTCAAGGTTCTGGCAAAGCACCTCTTTGACATCGAATCAGTGTTAAAGGAACTGCAGCTTCAGAAATTGGATGACTCTAGAGCTGCCAGGCAAGC ACTTGAAACCCTTGAAGCAGATGTCAAGAAGGCAAATAATTTGGTTGAGAAGTATAAAAACCGGGCCCGTTTCTACTTACTGGTAAAGTGTCGTCATATT GTAAATGAGGTGCAAGAAGTGACTAGGGATATCGGCAGGTCATTGGCTGCTTTATCACTTGCGAATACTGAAGTCCTCGCAGGGATATCTGACCAGATGA ATAGGCTACAGGATGAAATGCGAAGGGCTGAATTTGAAGCTTCGCATTCTCAGCTTCAGATTGTTGACAAGTTAAACCAGGGTCTGCGTGACCAGAAACT CGACCAGGGTTTCGCTAATGACATCCTGGAAGAAATAGCCAGGGCTGTTGGTGTACCTGTAGAACCTTCAGAGATAAGCAAAGAGCTAGCAAGCTTTAGA AGGGAAAAGGAAGAAGCTGCCAATAGGAAAGAAAGAGCTGAAGTTCTATTCTTAGAGCAGGTTATCGAATTGCTTTCTCATGCTGATGCTGCTAGAGATT ATGAAGAAATCACGAAGCAGTATTTTACGAGGCTTCAGGTTGTTGAGCGATTTGATGACAGGGAAGAATATATTACTCCACTTACTCCTTTCCTTTGTTG TATAAATGGGACTGTGATGACTGATCCTGTTAGCCTTTGTACTGGTACTACCTGTGAGAGAGCTGCCATTGAAGCTTGGTTTGACCGCGGAGAGAGAACT GACCCAGAAACAGGTGAGATTCTTGAAGATACAACTTTGAGGTCTAACGTCCGGCTCAGACAATCAATAGAGGAATGGAGAGAACTAAATTATTGCCTCA GAATCAGAGCTTCTAAGGCAAAGTTGTTAGCAAGTGCTGACTCATCTGTAGAAGAGGCCCTAAACCAAATGCAGGATCTGATGAGAGAAAATTCAATAAA CAAGGATTGGATCTCCATAGGAGGTCTAACAGATATCATAATATGTATTCTTGGGACCAGTCATAACAAAGATGAGAAGAGGAAGATCTTAGTAACCTTA AAGGATCTCGTCAAAGGGCATGTAAGAAATAAGGAAAAATTGGTCGACTATGGAGGGTGGGATCATGTTATTCCATGCTTAGGACGCGACCCAAGCATCT CAAAGGCTGCAGTGGAATTGCTATATGAGTTACTGCAAGAGAGGTCTGGTTGGAATGTGTCTGCCTGTAGGAAACTCTCTCAGCAGGGCAGTGCAATTCT ATTCCTTGTCACTCTTTTAAAAGGTCAAGTCAGGGAGTCAGCTGTTTATGCAGAAAAAATCTTGAACAAACTTGTTGAAATTGATGAGGAGAACATTTCT TGGGCTGCAAAATCAGGCTGGTATAAACCACTTATTGATCGGATTGTACAAGGGACCGATTCTTCAAGGATTTCAATGGTTCGAGCTTTAGTTAACATGG AATTGTTTGATTCAGACTTAAAGCTCCTCGGTGAGGAAGGGATATTACCCAGTTTGCTTCAAATGCTGTCATCTGGCAATCTTGAATCAAAAGAGTTATC TCTGTCTGCCCTGGTTAAACTCTCTGATTGCGCTGCCAATAAAGAGCTTATCGCTGCTGCTGGTGGGCTTCCACTTGTCATCACACTAATGTTTTCTGCT CATATGCGCTCAATGATTATCGTGAAGTGTTCTGAAATCTTGGAGAAATTCTCTTGTGATGATGATGGGATTAAATTCTTTATTGATGAAAATGGGGCCC AACTTGAATTAGAACCTATTGTCAGCGATTTGTTAGCTTTGCAACAGATTGCCCACTCATCCCAGAATGTTCGGAGGCCTGCTTTGCGTACACTTCTTGG AATTTGCAAGTTTGATGCAGGGTTGGTTAAGACTGCAGTTCTCACTGCTAAAGGTGTTTCTCTTGTACTTCCTCTTCTTGATGATACTGACTCAGAAATT CGTGAAATTGCCATAAATCTTCTCTTTCTATTCTCTCATCATGAACCACAAGGAGTGGTGGAATACCTTCTTAAGCCAAAAAGGCTTGAGGCATTAGTGG GGTTCCTTGAGAATGATGACAAGAGTGATGTACAAATGGCTGCTGCTGGTTTATTAGCCAATCTACCAAAATCTGAAGTCTCCGTAACCACGAAGCTAAT TGATCTGGATGGGCTCAATGCCCTCATAAAAATTATAAGAACAGGGACCATGGAAGCAAAAGAAAATGCTCTAAGTGCACTCTTCAGGTTCACAGATCCT GCAAATCCCGAGACACAGCGGATTGTGGTTGAACAAGGAGCTTACCCGTTGTTTGTAAACTTACTGACAACTGGCTCGGTAATGGCAAAAGCAAGAGCAG CAGCGCTCATTGGCGATCTTTCTAGAAGCAGTCCGAAGCTTGTTGTTGTGTCCAAAGCAACAGGATGCTGGTGTTTTCGGCCAACACGTCCTCATTTATG CCCAGCACATGGGGGTATCTGCAGTGTGAAAACTACATTTTGTCTCATTGAGGCAACTGCTCTGCCCGTCCTGGTAAAACTCTTACAAGGAGAGGTTCAT GTGATTGCTCACGAAGCAATTCAGACGCTTTCCACGCTGGTTCAGGAAGGCTCTCCTAACAGAGGAGCAAATGTCTTGCATGAGGCTGATGCCATAAAAC CAGTACTCGATATTTTCACGTGGGGAACAGATTCTCTAAAGGAAGAGGCTTTGGGACTTTTGGAGAAGGTTTTTTTGTCAAGGGAAATGGTGGAACACTA TGGACCTTCAGCCAGGTTAATTCTTGTTGGCATGCCTGGCAGGAATGGTCATGAGGATAGCCGTATGGGGAGGAGGGTCGCAAAAGTCTTGTCGCTCCTT GAACGCTATTCGAGATCATCAACATCTCTTCTGCCAGGAATATTTGGGTGA
AA sequence Show only first row Show all	>Potri.010G079200.4 pacid=42797598 polypeptide=Potri.010G079200.4.p locus=Potri.010G079200 ID=Potri.010G079200.4.v4.1 annot-version=v4.1 MALELVPIGTILAVLTSQVLKTAQAAKDVLIEKESFKVLAKHLFDIESVLKELQLQKLDDSRAARQALETLEADVKKANNLVEKYKNRARFYLLVKCRHI VNEVQEVTRDIGRSLAALSLANTEVLAGISDQMNRLQDEMRRAEFEASHSQLQIVDKLNQGLRDQKLDQGFANDILEEIARAVGVPVEPSEISKELASFR REKEEAANRKERAEVLFLEQVIELLSHADAARDYEEITKQYFTRLQVVERFDDREEYITPLTPFLCCINGTVMTDPVSLCTGTTCERAAIEAWFDRGERT DPETGEILEDTTLRSNVRLRQSIEEWRELNYCLRIRASKAKLLASADSSVEEALNQMQDLMRENSINKDWISIGGLTDIIICILGTSHNKDEKRKILVTL KDLVKGHVRNKEKLVDYGGWDHVIPCLGRDPSISKAAVELLYELLQERSGWNVSACRKLSQQGSAILFLVTLLKGQVRESAVYAEKILNKLVEIDEENIS WAAKSGWYKPLIDRIVQGTDSSRISMVRALVNMELFDSDLKLLGEEGILPSLLQMLSSGNLESKELSLSALVKLSDCAANKELIAAAGGLPLVITLMFSA HMRSMIIVKCSEILEKFSCDDDGIKFFIDENGAQLELEPIVSDLLALQQIAHSSQNVRRPALRTLLGICKFDAGLVKTAVLTAKGVSLVLPLLDDTDSEI REIAINLLFLFSHHEPQGVVEYLLKPKRLEALVGFLENDDKSDVQMAAAGLLANLPKSEVSVTTKLIDLDGLNALIKIIRTGTMEAKENALSALFRFTDP ANPETQRIVVEQGAYPLFVNLLTTGSVMAKARAAALIGDLSRSSPKLVVVSKATGCWCFRPTRPHLCPAHGGICSVKTTFCLIEATALPVLVKLLQGEVH VIAHEAIQTLSTLVQEGSPNRGANVLHEADAIKPVLDIFTWGTDSLKEEALGLLEKVFLSREMVEHYGPSARLILVGMPGRNGHEDSRMGRRVAKVLSLL ERYSRSSTSLLPGIFG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	2.00	0.9301	CBP60.12
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	4.47	0.9213
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	4.58	0.9013
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	5.91	0.8930	SYP121.2
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	6.92	0.8905
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028400 [exp]	7.21	0.8846
AT3G09010			Protein kinase superfamily pro...		Potri.004G040200 [exp]	7.61	0.8406
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.008G148000 [exp]	8.48	0.8722	APK2.2
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	9.16	0.8935
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.009G167400 [exp]	9.59	0.8689

Compare expression of checked genes

Potri.010G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.