Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26640 573 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 570 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 556 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G19440 509 / 4e-180 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G01120 506 / 2e-178 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G16280 503 / 2e-177 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 484 / 2e-170 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 464 / 2e-162 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34520 453 / 5e-158 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G25450 451 / 2e-157 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G080200 [exp] 718 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 718 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 717 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 711 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 591 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 580 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 580 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 577 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 577 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039401 [exp] 577 / 0 AT1G04220 644 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039399 [exp] 575 / 0 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10043300 [exp] 558 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 555 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006637 [exp] 554 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10006636 [exp] 548 / 0 AT1G04220 618 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 547 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 525 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 524 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 523 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.010G080000.2 pacid=42799989 polypeptide=Potri.010G080000.2.p locus=Potri.010G080000 ID=Potri.010G080000.2.v4.1 annot-version=v4.1 ATGACCTACGCTCCAAAAGGCTTGATGCGTGTCCCGCCAGACCAGTCCATGGCTGAATCCTGGAGGGAATCAGAGATGGTGATGTTCGGAGCAATTGATG ATCTCTTGGCCAAAACAAGGGTGAAGCCTAGAGACATAGGAATACTCGTGGTGAATAGCAGTTTGTTCAATCCCACGCCGTCTCTCTCAGCTAGAGTTGT GAATCACTACAAGCTTAGAGGGAACATTTTGAGCTATAATCTTGGTGGTATGGGCTGCAGTGCAGGATTTATTTCTATTGATCTTGCCAAAGACCTTTTG CAGGTGCATCCCAACTCCTATGCCCTAGTGGTGAGCACCGAGAACATTACTCGCAACTGGTATTTTGGCAATGACCGATCGATGCTTGTCACCAACTGCC TCTTCCGTATGGGAGCAGCCGCAGTCCTCCTATCCAACCGGACATTTGATCGCCGTCGCTCAAAGTATCAACTTATCCGTACTGTACGTACACATAAGGG TGCAGATGATAAGTCCTTCAACTGTGTCTTGCAACGAGAGGATCTTGACACCCAAAGAGTTGGCGTCTCTCTCTCAAAAGACCTAATGGCTATAGCTGGA GAAGCCCTTGAAACGAATATAACCACTCTGGGCCCATTAGTTCTTCCAGTCTCCGAACAACTTCTATTCTTTGTAACCTTAGTTGCCAAAAAAATCTTCA AGATGAAGCTAAAACCATACATTCCTGATTTCAAGTTGGCATTTGAGCACTTCTGCATCCACGCGGGAGGAAGAGGTGTGTTGGATGAGCTTGAGAAAAA TCTTGAGCTCACTGAATGGCATATGGAGCCATCAAGAATGACTCTTTATAGGTTTGGAAATACGTCTAGCAGTTCTTTGTGGTATGAATTGGCGTCCTCC GAGGCCAAGGGAAGGATCAAGAAGGGGGACAGAATTTGGCAAATAGGTTTTGGTTCAGGATTTAAGTGCAACAGTGCCGTGTGGCGTGCTATAAGAGCTA TCGATCCGGCCAAAGAGAAGAATCCTTGGATGGATGAGATTGATGACTTTCCAGTTCGTGTGCCCAGAGTGGCACCACTTGTTTATTAA
AA sequence Show only first row Show all	>Potri.010G080000.2 pacid=42799989 polypeptide=Potri.010G080000.2.p locus=Potri.010G080000 ID=Potri.010G080000.2.v4.1 annot-version=v4.1 MTYAPKGLMRVPPDQSMAESWRESEMVMFGAIDDLLAKTRVKPRDIGILVVNSSLFNPTPSLSARVVNHYKLRGNILSYNLGGMGCSAGFISIDLAKDLL QVHPNSYALVVSTENITRNWYFGNDRSMLVTNCLFRMGAAAVLLSNRTFDRRRSKYQLIRTVRTHKGADDKSFNCVLQREDLDTQRVGVSLSKDLMAIAG EALETNITTLGPLVLPVSEQLLFFVTLVAKKIFKMKLKPYIPDFKLAFEHFCIHAGGRGVLDELEKNLELTEWHMEPSRMTLYRFGNTSSSSLWYELASS EAKGRIKKGDRIWQIGFGSGFKCNSAVWRAIRAIDPAKEKNPWMDEIDDFPVRVPRVAPLVY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080000 [exp]	0	1
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.003G050700 [exp]	5.19	0.8527
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G313000 [exp]	6.16	0.8308
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080200 [exp]	7.14	0.9152
					Potri.002G249550 [exp]	8.94	0.8453
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Potri.001G293400 [exp]	10.00	0.8743
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.019G035100 [exp]	13.85	0.7880
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079700 [exp]	14.21	0.9346
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G141200 [exp]	20.59	0.8530
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079500 [exp]	31.36	0.9060
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.004G096000 [exp]	37.84	0.7914

Compare expression of checked genes

Potri.010G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.