Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26640 759 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 741 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 714 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G19440 669 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 661 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 628 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 617 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 602 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G26250 592 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G25450 583 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079700 [exp] 1062 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 1059 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 1044 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 810 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 783 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 780 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 768 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 768 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080000 [exp] 749 / 0 AT2G26640 573 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043300 [exp] 745 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 743 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006637 [exp] 742 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039399 [exp] 741 / 0 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 714 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10042318 [exp] 669 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 669 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10006636 [exp] 663 / 0 AT1G04220 618 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10001657 [exp] 646 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10021895 [exp] 645 / 0 AT1G04220 694 / 0.0 3-ketoacyl-CoA synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.010G080200.1 pacid=42797722 polypeptide=Potri.010G080200.1.p locus=Potri.010G080200 ID=Potri.010G080200.1.v4.1 annot-version=v4.1 ATGGCAGATGAGAAGAAACAAAACCTGGAAAACAAACCTGCGTTGTCTCCACCTCTACCCGAGAGGAAGAAAAACACCTTACCAAACTTCCTTTTATCTG TTCAGCTCAAATATGTGAAACTTGGTTACCACTACTTGGTTTCCAATGCCATGTACCTCATGCTCATGCCAGCACTTTGCGTGATTTTTGCTCATCTTTC AACATTCACAGTTGATGAGCTTTGGAATCAACTCAAATTCAATTTTGTGACAGTAGTTCTTTCCTCAACCTCAATTGTTTTTACTGCTACACTCTACTTC ATGAGCCGTCCAAGAAAAGTTTACTTGGTGGATTTTTCATGTTACAAGCCCGGACCAGCTCATAAAGCATCTAGAGAACTCTTCATGCAGTTATCTGCAG CGTCCGAGGTTTTCACAGAGCAAAGCTTAGCTTTTCAAAAGAAAATCCTAGAGAAATCAGGCTATGGTGAAATGACCTACGCTCCAAAAGGCTTGATGCG TGTCCCGCCAGACCAGTCCATGGCTGAATCCTGGAGGGAATCAGAGATGGTGATGTTCGGAGCAATTGATGATCTCTTGGCCAAAACAAGGGTGAAGCCT AGAGACATAGGAATACTCGTGGTGAATAGCAGTTTGTTCAATCCCACGCCGTCTCTCTCAGCTAGAGTTGTGAATCACTACAAGCTTAGAGGGAACATTT TGAGCTATAATCTTGGTGGTATGGGCTGCAGTGCAGGACTTATTTCTATTGATCTTGCCAAAGACCTTTTACAGGTGCATCCCAACTCCTATGCCCTAGT GGTGAGCACCGAGAACATTACTCGCAACTGGTATTTTGGCAATGACCGATCGATGCTTGTCACCAACTGCCTCTTCCGTATGGGAGCAGCCGCAGTCCTC CTATCCAACCGGACATTTGATCGTCGTCGCTCAAAGTATCAACTTATCCGTACTGTACGTACACATAAGGGTGCAGATGATAAGTCCTTCAACTGTGTCT TGCAACGAGAGGATCTTGACACCCAAAGAGTTGGCGTCTCTCTCTCAAAAGATCTAATGGCTATAGCTGGAGAAGCCCTTGAAACGAATATAACCACTCT GGGCCCATTAGTTCTTCCAGTCTCCGAACAACTTCTATTCTTTGTAACCTTAGTTGCCAAAAAAATCTTCAAGATGAAGGTAAAACCATATATTCCTGAT TTCAAGTTGGCATTTGAGCACTTCTGCATCCACGCGGGAGGAAGAGGTGTGTTGGATGAGATTGAGAAAAATCTAGAGCTCACTGAATGGCATATGGAGC CATCAAGAATGACTCTTTATAGGTTTGGAAATACCTCTAGCAGTTCTTTGTGGTATGAATTGGCGTACTCCGAGGCCAAGGGAAGGATCAAGAAGGGGGA CAGAATTTGGCAAATAGGTTTTGGTTCAGGATTTAAGTGCAACAGTGCCGTGTGGCGTGCTATAAGAGCTATCGAACCGGCCAAAGAGAAGAATCCTTGG ATGGATGAGATTGATGACTTCCCAGTTCGTGTGCCTAGAGTGGCACCTCTTGTTTATTAA
AA sequence Show only first row Show all	>Potri.010G080200.1 pacid=42797722 polypeptide=Potri.010G080200.1.p locus=Potri.010G080200 ID=Potri.010G080200.1.v4.1 annot-version=v4.1 MADEKKQNLENKPALSPPLPERKKNTLPNFLLSVQLKYVKLGYHYLVSNAMYLMLMPALCVIFAHLSTFTVDELWNQLKFNFVTVVLSSTSIVFTATLYF MSRPRKVYLVDFSCYKPGPAHKASRELFMQLSAASEVFTEQSLAFQKKILEKSGYGEMTYAPKGLMRVPPDQSMAESWRESEMVMFGAIDDLLAKTRVKP RDIGILVVNSSLFNPTPSLSARVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVVSTENITRNWYFGNDRSMLVTNCLFRMGAAAVL LSNRTFDRRRSKYQLIRTVRTHKGADDKSFNCVLQREDLDTQRVGVSLSKDLMAIAGEALETNITTLGPLVLPVSEQLLFFVTLVAKKIFKMKVKPYIPD FKLAFEHFCIHAGGRGVLDEIEKNLELTEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRIWQIGFGSGFKCNSAVWRAIRAIEPAKEKNPW MDEIDDFPVRVPRVAPLVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080200 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079700 [exp]	1.73	0.9607
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080000 [exp]	7.14	0.9152
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	9.38	0.9336	CADL2
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	11.83	0.9423
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	13.30	0.9342
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	15.42	0.9269
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G035800 [exp]	16.15	0.8865
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	16.15	0.9214
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	17.88	0.9205
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.003G050700 [exp]	18.81	0.8561

Compare expression of checked genes

Potri.010G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.