Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63400 187 / 3e-55 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G34870 151 / 5e-44 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G56070 149 / 3e-43 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 149 / 5e-43 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 147 / 3e-42 ROC3 rotamase CYP 3 (.1.2) AT2G15790 151 / 7e-42 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT4G38740 142 / 1e-40 ROC1 rotamase CYP 1 (.1) AT4G32420 153 / 3e-40 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) AT2G29960 134 / 4e-37 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G38730 134 / 6e-37 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047200 [exp] 180 / 4e-50 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G215800 [exp] 179 / 7e-50 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.019G014396 [exp] 154 / 4e-45 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G240200 [exp] 152 / 2e-44 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 150 / 2e-43 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G135500 [exp] 155 / 3e-43 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 154 / 5e-43 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G168800 [exp] 149 / 5e-43 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.004G144300 [exp] 155 / 6e-43 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024831 [exp] 182 / 6e-51 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 179 / 9e-50 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10013111 [exp] 175 / 6e-48 AT3G63400 288 / 5e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10027924 [exp] 156 / 6e-44 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10012167 [exp] 150 / 1e-43 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10008079 [exp] 163 / 2e-43 AT4G32420 263 / 2e-75 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Lus10022012 [exp] 150 / 2e-43 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 150 / 3e-43 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10012059 [exp] 155 / 5e-43 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 149 / 5e-43 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.010G080800.2 pacid=42798534 polypeptide=Potri.010G080800.2.p locus=Potri.010G080800 ID=Potri.010G080800.2.v4.1 annot-version=v4.1 ATGAACCAATTGCATACAAATAAAATCCAAGAGAGCCTGTTTTCCTTTCTCAGAAACACCCCCTCTCCGTCATCAACAAGCTCCTTTGAGAGAAGAAGAA TGAGAAATACACAAAATCCTGAAGTATTTTTAGACATATCCATTGGTGGGAATCTTGCAGAAAGAATTGAAATAGAGCTTCTTGCAGATCAGGCCCCTAA GACTGCACAGAACTTTCTAGCGCTTTGCGCAGGTGACATGGGACTGGGAAAGCATACGGGAAAGCCTATGTACCTCAAAGGGTCAACTTTTTATAATATA GTGAGGGGAAAATGGGCTGAGGGTGGAGATTTCTCTGAGGAAAATGGAACTGGTGGAGAGAACATATATGGAATACCATTTTTTGATGAGGGCGAGAGAC TCAAACATGATGCACCTTATCTTCTCACAACGGCAAGTGATTATCATAAATATACAATCGGATCCTGTTTCTTTATCACCTTCAATGAGCTACATGAACT CGATGGGAAACATGTTGTGTTTGGAAGAGTTGTGAGAGGCTATGAAACAGTGCAGAAAATTGAACAGGTCCAAACATTTCCTGATGGAAGGCCCGAACAT CTTGTCATCATTACAGCATGTGGAGTATCTCCTAAAAAAAGAAGTCTTAATTCAATCTTGATAAGGGAAGATTCCAGTTTGCCTTCTGAAGGAAGACATT CGAGAAAAAGAAAGTCAAAAAGACACGGAGTTGTTGAGCACCACTCTGAATCCAGATGTGGGACTGTGAAAGCTGGGGTGACTTGTCGTTGTAAATATTC TGAACTTTTCAGGCATGATCAAAATCAGAAAGGTCATTCCAATCAGTCATCTCCAAGCCATTACCAAAGCAAGTCAAGAGAAAAAACTTCCCCTGGATGG AATTATGAAGGTGACGGGAATAGTGCCAAGGAATCAGCCCCTAGGCATTCAAGGAGCAAATTGAGAGACAAGACTTCCCAAGGATCCCGATGGCCTAGTC CAATCCAGAGAAGTGATTCCAAGCACTCACCTCGGAGGCGTAACCGGAGCAATTCAAGAGACAGAACAGGCCATCAATGGCGTATTCGAAGTGAGATAAG TGATGCAAGGAACCGATACAGGAGCAAGAGTGGCCGAAGCAGGAAAAACTTGCAAAAAGCACCTGGTTCACATGCACATGACCGTGGTCACAGCAAGCAA CAAAATCACCGTCCAGATCCTGAAACGGAGTTTCCTAGCTTGAGTAACAGTATGCAAATGCGACTCCGTCTCCCTGGAGATGATGCACAGCCTTAA
AA sequence Show only first row Show all	>Potri.010G080800.2 pacid=42798534 polypeptide=Potri.010G080800.2.p locus=Potri.010G080800 ID=Potri.010G080800.2.v4.1 annot-version=v4.1 MNQLHTNKIQESLFSFLRNTPSPSSTSSFERRRMRNTQNPEVFLDISIGGNLAERIEIELLADQAPKTAQNFLALCAGDMGLGKHTGKPMYLKGSTFYNI VRGKWAEGGDFSEENGTGGENIYGIPFFDEGERLKHDAPYLLTTASDYHKYTIGSCFFITFNELHELDGKHVVFGRVVRGYETVQKIEQVQTFPDGRPEH LVIITACGVSPKKRSLNSILIREDSSLPSEGRHSRKRKSKRHGVVEHHSESRCGTVKAGVTCRCKYSELFRHDQNQKGHSNQSSPSHYQSKSREKTSPGW NYEGDGNSAKESAPRHSRSKLRDKTSQGSRWPSPIQRSDSKHSPRRRNRSNSRDRTGHQWRIRSEISDARNRYRSKSGRSRKNLQKAPGSHAHDRGHSKQ QNHRPDPETEFPSLSNSMQMRLRLPGDDAQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.010G080800 [exp]	0	1
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.015G071001 [exp]	21.21	0.5767
AT1G40390			DNAse I-like superfamily prote...		Potri.014G186733 [exp]	30.51	0.4909
					Potri.002G022002 [exp]	43.79	0.5208
					Potri.015G072732 [exp]	44.60	0.5106
					Potri.004G151301 [exp]	51.22	0.4619
					Potri.002G253701 [exp]	55.85	0.4372
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	58.35	0.4951
					Potri.011G164750 [exp]	58.39	0.4436
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Potri.001G346600 [exp]	66.09	0.4625	Pt-MYB24.2,MYB207
					Potri.001G420750 [exp]	67.37	0.4907

Compare expression of checked genes

Potri.010G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.