Plant FIBer expression Database

Potri.010G081000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14650 54 / 5e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G159200
[exp]
1139 / 0 AT4G14650 56 / 9e-08 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039390
[exp]
84 / 2e-16 ND 41 / 0.002
Lus10006631
[exp]
78 / 2e-14 ND /
PFAM info
Representative CDS sequence
>Potri.010G081000.5 pacid=42797338 polypeptide=Potri.010G081000.5.p locus=Potri.010G081000 ID=Potri.010G081000.5.v4.1 annot-version=v4.1
ATGGGAAATGAGATGGGCAACAATAACACATCTGGATTGCGAGAAGAAGATACCATGGCCGATGAGGATCAGGGAAAATCTGTACAAGAACTTGTTAATG
CCAACGTTGTAAAAGAAGAAAATCATGTGCTTCCTGCAGAAGAGAGTGAGGATTATCATGAAAAAGTTACAGGGTTAGATTCTGACGATCCAAAGGGTTC
TGGAGATATTCATGATCATAACCAGGCATCGGATGAGTCAGATCATACCGAAGTCCATCCAGCTGCTGGATCTCCTAAAGCAGAACTGAAATCAAATGAA
GTGGGTGGCGAAGATAATCAATCTCAACCAGCTTCTTCGCCGAATGAATTGGAAGGTCATGAGAAGCCAACAGAGTCCAATTTGGAGGGCAATGTTCTGG
GAGCAAACAGCAATCAGCTTGAGAAGCGAGCTTCCTTCAAGAAAGAGGAAGAGAAGGTCATGTCAACATCACCTTTTTTTACCATATCACCATCACATGA
TCCAGAACCTCAAGACTCTGTGGGATTGAAGTTTGATCAACATGAATTAACAGAAACTTGTGCTGACCAATCTGCACAAGATAGCTTTAATTCATCGAAA
CCAAGTGAAAATATCCTGGGAACAAGTATTGCAGGCATTACTTCGGCGAATGATCACCTGTTGAATACCTGCCTATCTGACAATCTGGATGGAATTCTTG
TTTCTGGGACCAATCTAGATGTGGAGGAGAAAAGGGTTGACTTGTCAGAGAAAGAAATGACATCTCAAGAAGATGAGATGCTCAGTGAAGAGAAAGTTGA
GGTTGGAAATTATTCAGCCAAAACAAATGTTATTGACGCAACAAGGATATCATCAGATTCTCGAAGTGATTACAGAGATAAATGTGAAGAAGAGTTCACC
AGTGAAATGGATTGTTATGGAAACAATTGCTCAGAGTCACATCCAGAGGCCAATCTGATGGCTAACTCACTAAACTCCCATATAGAACTATCTGTACCTG
AAGACAAATGCTTTGTCTCCACTGAAGAAACTGAATTCATGAGAAAAGAATCAGAAATAGAAGCTAACGAGCATCATTACGACCTGAATCAGTTACGTGA
GGATTCAATTAGAGAATCAGATAATGACTTGGCAAATGCATCTCAAACTGATTCTTTTCTCGGATCAAGTTGCAAGAATAATGAGGAGAGTTCAGTTAAT
GTTTCTCATGATCCTGTTAGCAACGGAAGCTGCCAAGTTGAGAAGGCAAAGGTTGATGAGAATGGCTACCACGTTGACTTGTTCAATGGCATCCAGAGTG
AAGCTTTTGAAGACAGCTGCAAGGAATCTGAAGGAGACACTATGATGGTTCCTGAACTTGGAATGCTCCCAGAAGAGTTATCCATGTCCAACAGAAGAGG
CAATGAAGAGGAAACAGATTGTACAATGGGGGAAGAGAAACCAGAAGAGAGGCAAATTGTCGAAAAGATAAAGGAGAAGACCGAAGTTCCATGTGCCGTG
GGTAAGGGTGCAGAAGAACAGCAAAGCGGAGAACAGTTTATGTCCAGAACAGTTTCGGTACAAGCAGAAGCATATACCCCAAAGGCTCCGGCTTCTCTGT
TCCAGACTCAAGATCAGCAACAAGAAACGGTAATGGCATCTGCCGTTGCTCAATGTAGCAATGAGTTAGCCCTGGAATTGAGGCCTGAGAGTTGCAAGGA
GTTCCTTGTTGCAAAGGCTTCTACTGACCAAGCCGCGGGCATAAATATTGCAGGGAACTCAGCTTCTACGGTTGAGTTGGCAATGGACAAGCCTCAACAA
GAAGATTCATTCTATGTCATAGCAGCTCCAGAAATTGTGAGAGAAACCAAGTCCTTCGATTTTGAACGAAGTGAAATACTTGAAACAACTATCTTTCCAA
AGGGTGGCCATGAGGCACAAGAAAGTGTGGGGAGGTTCAGCACTGAATCAAATCCTGACAATCTGAACATCCATGTACAGATGCGAAAGTCGCCAAGCTT
TGATCTTGATCTCCGAATAGAAGCAAGGAGTGAAGAGTCAGATCAGACTCCACTGCTTTATCAAGACAAGACTACAATTGAAAGCTCATCAAATCAGGCT
AAAGTAAGACTGCAAAGTCCACGTCTGCTTCCTCACTATAATCAAGAATCACTTCGAGCAAAGCCAGTGGAAGAGAAAGTGATTACTCTGGAAACAAGTG
ATTCTGAGAAGTCAAGAACACCATCTCTTGGTTTCTTGAAAGAAGAAGAGGCTCATGTTCTTGTTACACCAACGAAACAGGATAACCATGCTGCTGCAAA
GAAGGCAGCCAAGGATTTATGGAACTCACGTACGAAGGAAGTGGCATCAGCTTCACCTAAAGCTAAAGAGAAGCATAAGCGCAGAACATCCCTCTTTGGT
CAGTGCATGTGTTGTGCAACAGTGATTAATTAA
AA sequence
>Potri.010G081000.5 pacid=42797338 polypeptide=Potri.010G081000.5.p locus=Potri.010G081000 ID=Potri.010G081000.5.v4.1 annot-version=v4.1
MGNEMGNNNTSGLREEDTMADEDQGKSVQELVNANVVKEENHVLPAEESEDYHEKVTGLDSDDPKGSGDIHDHNQASDESDHTEVHPAAGSPKAELKSNE
VGGEDNQSQPASSPNELEGHEKPTESNLEGNVLGANSNQLEKRASFKKEEEKVMSTSPFFTISPSHDPEPQDSVGLKFDQHELTETCADQSAQDSFNSSK
PSENILGTSIAGITSANDHLLNTCLSDNLDGILVSGTNLDVEEKRVDLSEKEMTSQEDEMLSEEKVEVGNYSAKTNVIDATRISSDSRSDYRDKCEEEFT
SEMDCYGNNCSESHPEANLMANSLNSHIELSVPEDKCFVSTEETEFMRKESEIEANEHHYDLNQLREDSIRESDNDLANASQTDSFLGSSCKNNEESSVN
VSHDPVSNGSCQVEKAKVDENGYHVDLFNGIQSEAFEDSCKESEGDTMMVPELGMLPEELSMSNRRGNEEETDCTMGEEKPEERQIVEKIKEKTEVPCAV
GKGAEEQQSGEQFMSRTVSVQAEAYTPKAPASLFQTQDQQQETVMASAVAQCSNELALELRPESCKEFLVAKASTDQAAGINIAGNSASTVELAMDKPQQ
EDSFYVIAAPEIVRETKSFDFERSEILETTIFPKGGHEAQESVGRFSTESNPDNLNIHVQMRKSPSFDLDLRIEARSEESDQTPLLYQDKTTIESSSNQA
KVRLQSPRLLPHYNQESLRAKPVEEKVITLETSDSEKSRTPSLGFLKEEEAHVLVTPTKQDNHAAAKKAAKDLWNSRTKEVASASPKAKEKHKRRTSLFG
QCMCCATVIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14650 unknown protein Potri.010G081000
[exp]
0 1
AT5G14360 Ubiquitin-like superfamily pro... Potri.001G339100
[exp]
1.00 0.8030
AT3G46540 ENTH/VHS family protein (.1) Potri.009G030500
[exp]
4.00 0.7774
AT3G04860 Plant protein of unknown funct... Potri.005G050000
[exp]
6.24 0.7763
AT5G19650 OFP ATOFP8, OFP8 ovate family protein 8 (.1) Potri.006G158800
[exp]
10.04 0.6594
AT5G13190 AtGILP GSH-induced LITAF domain prote... Potri.001G061900
[exp]
10.58 0.7731
AT1G20925 Auxin efflux carrier family pr... Potri.002G003500
[exp]
14.69 0.6694
AT1G25500 Plasma-membrane choline transp... Potri.008G118200
[exp]
19.07 0.7259
AT1G57820 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTH... Potri.001G067700
[exp]
29.15 0.6934
AT1G71740 unknown protein Potri.005G198200
[exp]
30.28 0.7363
Potri.005G098650
[exp]
32.49 0.6808

Potri.010G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.