Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22890 758 / 0 APS1 ATP sulfurylase 1 (.1) AT4G14680 758 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT5G43780 717 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT1G19920 657 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159000 [exp] 894 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1) Potri.002G024200 [exp] 655 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.005G237300 [exp] 644 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006629 [exp] 815 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1) Lus10039389 [exp] 702 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10034513 [exp] 664 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10033158 [exp] 658 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01747 [poplar] [flax] ATP-sulfurylase ATP-sulfurylase CL0178 [poplar] [flax] PUA PF14306 [poplar] [flax] PUA_2 PUA-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G081200.1 pacid=42798571 polypeptide=Potri.010G081200.1.p locus=Potri.010G081200 ID=Potri.010G081200.1.v4.1 annot-version=v4.1 ATGGCTACCATGTCTACTCTCTTCACCAAAACCTCTTACAGTTCTCACTCTCTCCCAAAACCACTCAATACCCACTTTGGCCCTACCCTCAAGCTATCAT TTGCCCCCAAAACCCAATGGAAACGGGTCAGGATTCAAGCCGGGTTGATCGACCCAGATGGTGGGAAACTTGTTCAACTATTCGCTGAAAAGTCACAACA AGATCTTAAAAAGAAAGAGGCAATTTCATTGCCTAAAGTTAAGTTAACAAAGATTGATATTCAATGGGTGCATGTTTTAAGCGAGGGCTGGGCAAGCCCT CTCCGCGGGTTCATGAGAGAATCCGAGTTCCTCCAAACACTTCATTTCAACTCGCTCCGTTTGGAAAACGGGTCGGTTGTTAACATGTCGGTGCCTATTG TGCTCGCTATTGATGATTTGCAGAAGCAGGGTATTGGCGAGTCCAAAAGGGTCGCTCTTGTTGACTCTGATGACAATACCATTGCCATTTTCAACGATAT AGAGATTTATAAGCACCCCAAAGAAGAACGGATTGCGAGAACATGGGGAACTAGTGCTCCTGGTTTACCTTACGCTGAAGAAACCATAGCTAAGTCTGGG AACTGGCTGATTGGAGGGGACTTGGAAGTTTTAGAACCAATCAAGTATCATGATGGCCTTGATCATTTTCGGTTGTCACCTGCAGAACTCCGTGAAGAAT TCACTAGGCGTAATGCAGATGCTGTCTTTGCATTCCAGCTCAGGAATCCCGTGCACAATGGACATGCTTTACTCATGACAGATACTCGCAGACGGCTTCT TGAGATGGGCTATAAGAATCCCATCCTTTTGCTTCATCCACTAGGAGGCTACACAAAAGCAGATGATGTTCCACTCAGCTGGAGAATGAAGCAACATGAG GAGGTGCTTAAGGATGGTGTCCTTGATCCAGAAACAACTGTGGTTTCAATATTCCCATCTCCCATGCAATATGCTGGTCCAACTGAGGTGCAGTGGCATG CAAAAGCTCGGATTAATGCAGGAGCTAACTTTTACATTGTTGGCAGGGATCCAGCTGGAATGAGCCATCCAGTTGAGAAGAGAGATTTATATGATGCTGA TCATGGGAAGAAAGTGTTGAGTATGGCCCCAGGACTGGAGCGTTTAAACATTCTTCCTTTCAGGGTTGCTGCATATGATAAGACTCAGGGTAAAATGGCA TTCTTTGATCCCTCGAGGCACGGAGACTTCCTCTTTATATCTGGCACAAAGATGCGAACACTCGCAAAGAACAAAGAGAACCCTCCCGATGGATTCATGT GCCCTGGTGGCTGGAAAGTGTTGGTTGAATACTATGACAGTTTGACACTGGCAGGCAATGGCAAAGTCCCAGAACCTGTCCCAGCTTAA
AA sequence Show only first row Show all	>Potri.010G081200.1 pacid=42798571 polypeptide=Potri.010G081200.1.p locus=Potri.010G081200 ID=Potri.010G081200.1.v4.1 annot-version=v4.1 MATMSTLFTKTSYSSHSLPKPLNTHFGPTLKLSFAPKTQWKRVRIQAGLIDPDGGKLVQLFAEKSQQDLKKKEAISLPKVKLTKIDIQWVHVLSEGWASP LRGFMRESEFLQTLHFNSLRLENGSVVNMSVPIVLAIDDLQKQGIGESKRVALVDSDDNTIAIFNDIEIYKHPKEERIARTWGTSAPGLPYAEETIAKSG NWLIGGDLEVLEPIKYHDGLDHFRLSPAELREEFTRRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPILLLHPLGGYTKADDVPLSWRMKQHE EVLKDGVLDPETTVVSIFPSPMQYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMA FFDPSRHGDFLFISGTKMRTLAKNKENPPDGFMCPGGWKVLVEYYDSLTLAGNGKVPEPVPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.010G081200 [exp]	0	1
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.010G098900 [exp]	9.21	0.7639
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114400 [exp]	10.39	0.7162
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	14.83	0.7541
AT3G52480			unknown protein		Potri.006G204400 [exp]	24.00	0.7001
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Potri.018G143600 [exp]	25.45	0.7494
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	31.49	0.7442
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.010G097800 [exp]	32.18	0.7285
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.010G115600 [exp]	50.19	0.6667
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G125700 [exp]	53.29	0.6861	Pt-HMA5.1
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	55.00	0.6997

Compare expression of checked genes

Potri.010G081200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.