Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43810 1663 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 1409 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 1021 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 578 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 502 / 6e-163 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 487 / 6e-157 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 472 / 9e-152 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G31280 457 / 1e-144 AGO2 argonaute 2, Argonaute family protein (.1) AT5G21030 444 / 3e-141 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31290 439 / 4e-136 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158800 [exp] 1955 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.012G037100 [exp] 1459 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 1458 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.009G001500 [exp] 1096 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 1086 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 1003 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 617 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 515 / 7e-168 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 499 / 1e-161 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006627 [exp] 1743 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10039386 [exp] 1668 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10031331 [exp] 1449 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 1410 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 1410 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 1333 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10014386 [exp] 721 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036794 [exp] 600 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 595 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 593 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute CL0219 [poplar] [flax] PF16487 [poplar] [flax] ArgoMid Mid domain of argonaute CL0219 [poplar] [flax] PF16488 [poplar] [flax] ArgoL2 Argonaute linker 2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G081300.11 pacid=42798228 polypeptide=Potri.010G081300.11.p locus=Potri.010G081300 ID=Potri.010G081300.11.v4.1 annot-version=v4.1 ATGCCTATAAGGCAAATGAAAGAGAGCTCAGAGCAGCACTTAGTGATAAAAACTCACATGCAGAACTCCATAAACCAACCTCAAAAACACCACAAAACTG CTCAAAATGGCAAAGGACCACCACAACCACTCCAAGAAAGTTCCAACACTAAACCCCAAAACCAGACCTCACCTCCTGCAAAGAATAGAGGGAGAAGGAG AGGCAGAGGTGGTAGAAAGTCTGATCAAGGAGATGTATGTATGAGGCCTTGTTCAAGGCCTTGTACCGTAGTACATAAACCTGTTGTGAATCCAATTGGT GATCTCCTGTCAACTACTTCAAGCGGGCCTATTGAGACTGGTAAAAATGTTTGTGAAATGGAGATGGGTCCGGGGTTCCCAACCTCAAGCAAGTCTTTGA GTTTCGCGCGTAGGCCTGGTTATGGTCAAGTTGGTAGTAAGTGTATTGTTAAGGCCAACCATTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAGTA TGATGTTACTATAACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCTATTATGGCAGAGCTCGTGAGGCTTTACAAAGAATCTGATTTAGGAATGCGA CTGCCTGCTTATGATGGCAGAAAGAGCTTGTACACAGCTGGTAAGCTTCCGTTTGCTTGGAAGGAGTTCGCTATTAAGCTTGTTGATGCACAGGATGGTA TCAGTGGTCCCAAGAGAGAGAGAGAATACAAAGTGGTGATCAAGTTTGTTGCAAGGGCAAACATGTATCATTTGAGTCAATTCTTAGCTGGAAAACATGC TGATGCTCCGCAGGAAGCTCTACAGATTCTTGACATTGTACTGAGAGAGCTCTCTACAAAGAGGTATTGCCCTGTTGGAAGATCCTTTTTTTCACCCGAT ATAAGAGCACCACAGCGACTAGGTGATGGCTTGGAATCCTGGTGCGGATTTTACCAGAGTATAAGACCGACTCAAATGGGACTGTCCTTAAACATTGATA TGGCCTCGGCAGCATTCATTGAGCCTCTTCCTGTGATAGAGTTTGTCGCTCAGCTTCTAGGCAAAGATGTATTGTCAAGGCCATTGTCTGATTCTGATCG AGTGAAGATTAAAAAAGGTCTAAGAGGAGTGAAAGTTGAAGTAACTCACAGAGGGAGTGTACGAAGAAAGTATCGTGTCTCGGGCTTGACATCTCAGCCT ACAAGAGAACTTGTGTTTCCTGTTGATGATAACTCGACAATGAAGTCAGTCGTTGAATACTTCCAAGAGATGTATGGCTTCACCATTCAACATGCACATC TACCTTGCCTTCAGGTTGGAAACCAGAAGAAAGCAAATTATCTACCCATGGAGGCTTGCAAAATTGTGGAGGGGCAACGGTATACAAAACGGTTGAATGA GAGGCAAATTACTGCCCTTCTAAAAGTTACATGTCAAAGACCCCGGGATCGGGAAAATGACATTTTGCAGACTGTTCAGAATAATGCTTATGATCAAGAC CCCTACGCGAAGGAGTTTGGGATCAAAATCAGTGAAAAGCTTGCTTCTGTTGAGGCTCGAATTCTCCCTGCCCCTTGGCTGAAATATCATGAAACTGGAA AAGAAAAGGATTGCTTGCCTCAAGTGGGGCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTAAGCCGGTGGGCATGTATTAACTTCTC AAGGAGTGTGCAAGAGAGTGTTGCTCGTGGCTTTTGCAATGAACTTGCCCAAATGTGTCAAGTTTCTGGAATGGAGTTCAATTCAGAGCCTGTGATCCCT ATCTACAATGCCAGGCCTGAGCATGTAGAGAAAGCTTTGAAGCACGTCTATCATGCATCCACAAACAGAACCAAAGGAAAAGAGCTAGAGCTTCTCTTAG CTATTCTACCTGACAACAATGGGTCCCTATATGGTGATCTGAAGCGAATATGCGAAACTGATCTTGGTTTAATAACTCAATGCTGTCTCTCGAAACATGT GTTCAAGATCAGTAAGCAGTACTTGGCAAATGTGTCCCTCAAGATCAATGTAAAGATGGGTGGTAGAAATACTGTCCTTTTAGATGCTATCAGCTGCAGA ATACCATTAGTTAGCGACATACCAACCATTATTTTTGGAGCAGATGTGACTCACCCAGAGAATGGAGAGGACTCAAGCCCCTCAATAGCTGCTGTGGTGG CTTCTCAGGACTGGCCTGAAGTAACAAAATATGCTGGACTAGTTTGTGCTCAAGCTCACAGACAGGAACTCATACAGGACTTGTACAAAACATGGCAAGA TCCTGTTCGTGGTACTGTTAGCGGTGGCATGATCAGAGATCTTCTGATTTCTTTCAGGAAAGCAACTGGACAAAAGCCGCTAAGGATCATATTTTACAGG GATGGTGTTAGTGAAGGACAATTTTATCAAGTTCTGCTTTATGAGTTGGATGCGATTCGGAAGGCCTGTGCGTCTTTGGAGCCAAATTATCAGCCACCAG TAACTTTCATAGTTGTACAAAAACGTCACCACACTAGATTGTTTGCTAACAACCATAGGGACAGGACTAGCACAGACAAGAGTGGAAACATACTGCCTGG CACTGTGGTTGATTCTAAAATCTGTCATCCAACAGAGTTTGACTTCTATCTCTGTAGCCATGCTGGTATTCAGGGGACAAGTAGGCCAGCGCACTATCAT GTTTTGTGGGATGAGAACAACTTCACAGCCGATGGAATCCAGTCTTTGACGAATAATCTCTGCTACACATATGCTAGGTGCACTCGCTCCGTTTCAGTAG TTCCTCCGGCATACTATGCACATTTAGCTGCATTTCGTGCTCGATTTTACACGGAGCCAGTAATGCACGAGACTGGCTCAGCAGGCAGTGGTGCTGGCCA TGGTGCTAAGGGAACACGAACAGGAGAATCTGGTGTCCGGCCACTGCCGGCCTTGAAAGAGAATGTAAAGAGAGTAATGTTTTATTGTTAG
AA sequence Show only first row Show all	>Potri.010G081300.11 pacid=42798228 polypeptide=Potri.010G081300.11.p locus=Potri.010G081300 ID=Potri.010G081300.11.v4.1 annot-version=v4.1 MPIRQMKESSEQHLVIKTHMQNSINQPQKHHKTAQNGKGPPQPLQESSNTKPQNQTSPPAKNRGRRRGRGGRKSDQGDVCMRPCSRPCTVVHKPVVNPIG DLLSTTSSGPIETGKNVCEMEMGPGFPTSSKSLSFARRPGYGQVGSKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMR LPAYDGRKSLYTAGKLPFAWKEFAIKLVDAQDGISGPKREREYKVVIKFVARANMYHLSQFLAGKHADAPQEALQILDIVLRELSTKRYCPVGRSFFSPD IRAPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRPLSDSDRVKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQP TRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQNNAYDQD PYAKEFGIKISEKLASVEARILPAPWLKYHETGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNSEPVIP IYNARPEHVEKALKHVYHASTNRTKGKELELLLAILPDNNGSLYGDLKRICETDLGLITQCCLSKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCR IPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYR DGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRTSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYH VLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPVMHETGSAGSGAGHGAKGTRTGESGVRPLPALKENVKRVMFYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.010G081300 [exp]	0	1
AT2G04235			unknown protein		Potri.001G315950 [exp]	6.32	0.7217
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.013G046500 [exp]	6.92	0.7363
					Potri.007G020732 [exp]	10.00	0.7585
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	10.95	0.7260
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Potri.006G106800 [exp]	11.53	0.7029
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Potri.002G007400 [exp]	11.61	0.7380	GLR3.2
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.003G087700 [exp]	13.34	0.7439	PtpRR10
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016116 [exp]	14.07	0.7193
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009900 [exp]	17.43	0.6758
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.002G149600 [exp]	20.97	0.7195

Compare expression of checked genes

Potri.010G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.