Plant FIBer expression Database

Potri.010G081351 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G081351.1 pacid=42800131 polypeptide=Potri.010G081351.1.p locus=Potri.010G081351 ID=Potri.010G081351.1.v4.1 annot-version=v4.1
ATGGTCCCCTCATATGCTCTCCTAGCACTCGTACACCCACCCCTTTTGGCTCATGGGTTTGATGCTTTACTCCTCACAGTCAGAGAGATAGTCCCCCACT
CTCCCAGGGCCCAGCCTAAGAAAGTATTTAATGCTCCTACAATATATATGGAAACACTCACTAACTTGTCTGCAAAACTGCATGGTTCTCTTCTTGGCGT
GACAATATTCAATTTGCATCATCAGGGACCACTCCTTACATTTTCCATATATAAATTTTGTTTTTATTTATTTTTTCCCTGTAGCCCGCTTTCTCAATCT
TCACAGTCCTCCTATATTCCATCAACAACAAAAAATAAAAATCAAATTAATGATAAAATAATCCTGATAATTCATAACTCCCCTTCAATCCCCTCCTCAT
CCTTCTATTTATACCTCCTTCATCCTCTCACCCTCTTCATACCCTCTCATCTCCTGCTGTTCTTAAAGTACTAG
AA sequence
>Potri.010G081351.1 pacid=42800131 polypeptide=Potri.010G081351.1.p locus=Potri.010G081351 ID=Potri.010G081351.1.v4.1 annot-version=v4.1
MVPSYALLALVHPPLLAHGFDALLLTVREIVPHSPRAQPKKVFNAPTIYMETLTNLSAKLHGSLLGVTIFNLHHQGPLLTFSIYKFCFYLFFPCSPLSQS
SQSSYIPSTTKNKNQINDKIILIIHNSPSIPSSSFYLYLLHPLTLFIPSHLLLFLKY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G081351
[exp]
0 1
AT2G36780 UDP-Glycosyltransferase superf... Potri.003G100500
[exp]
1.73 0.8774
AT5G01820 PKS24, CIPK14, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.016G133900
[exp]
5.00 0.8690 Pt-CIPK14.1
AT3G47420 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease ... Potri.001G124200
[exp]
15.49 0.8643
AT2G22860 ATPSK2 phytosulfokine 2 precursor (.1... Potri.014G006900
[exp]
18.43 0.8491 Pt-PSK3.2
AT3G49760 bZIP ATBZIP5 basic leucine-zipper 5 (.1) Potri.014G007100
[exp]
21.79 0.8463
AT2G03760 AtSOT12, AtSOT1... ARABIDOPSIS THALIANA SULFOTRAN... Potri.003G188933
[exp]
23.06 0.8638
Potri.005G126301
[exp]
27.38 0.8553
AT3G53160 UGT73C7 UDP-glucosyl transferase 73C7 ... Potri.001G133100
[exp]
28.24 0.8516
AT3G16350 MYB Homeodomain-like superfamily p... Potri.003G049100
[exp]
35.07 0.8619
AT2G20570 GARP ATGLK1, GLK1, G... ARABIDOPSIS GOLDEN2-LIKE 1, GB... Potri.017G015800
[exp]
36.66 0.8426

Potri.010G081351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.